Locus 3072

Sequence ID X_DroMel_CAF1
Location 8,204,752 – 8,204,846
Length 94
Max. P 0.507701
window5025

overview

Window 5

Location 8,204,752 – 8,204,846
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 97.66
Mean single sequence MFE -17.04
Consensus MFE -15.78
Energy contribution -16.74
Covariance contribution 0.96
Combinations/Pair 1.05
Mean z-score -1.17
Structure conservation index 0.93
SVM decision value -0.05
SVM RNA-class probability 0.507701
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8204752 94 + 22224390
UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG
..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -18.10)
>DroSec_CAF1 106678 94 + 1
UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG
..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -18.10)
>DroSim_CAF1 86483 94 + 1
UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG
..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -18.10)
>DroEre_CAF1 96867 94 + 1
UUUCAGCUAGAACAAAACUCAAUUAACAUUUGAGAGGAUAAACUGUUGAGGAGACAGCAUAGUCAAAGAGCCGAGCACACAUGCACUUCAAAGG
..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... ( -16.20)
>DroYak_CAF1 96869 94 + 1
UUUCAGCUAGAACAAAACUCAAUUAACAUUUGAGAGGAUAAACUGUCGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG
..((.(((.........(((((.......)))))..(((....((((.....)))).....)))....))).))(((....))).......... ( -14.70)
>consensus
UUUCAGCUAGAACAAAACUCAAUUAACAUUCGAGAGGAUAAACUGUUGAGGAGACAACAAAGUCAAAGAGCCGAGCACACAUGCACUUCAAAAG
..((.(((.........((((((....((((....)))).....))))))..(((......)))....))).))(((....))).......... (-15.78 = -16.74 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:17 2006