Locus 307

Sequence ID X_DroMel_CAF1
Location 983,643 – 983,738
Length 95
Max. P 0.586817
window463

overview

Window 3

Location 983,643 – 983,738
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.23
Mean single sequence MFE -24.13
Consensus MFE -16.63
Energy contribution -17.68
Covariance contribution 1.06
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.69
SVM decision value 0.11
SVM RNA-class probability 0.586817
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 983643 95 + 22224390
CCAAGCUGAAGUCGCAGUCGAAAAUGCAAAAUGCAAAAUGCAGGGCUUCAGUCCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC----C
.((((((((.(..(((((((((((.((....(((.....)))((((....))))............))))))))))....))).))))))))).----. ( -26.30)
>DroSec_CAF1 66382 95 + 1
CCAAGCUGAAGUCGCAGUCGAAAAUGCAAAAUGCAAAAUGCAGGGCUUCAGUUCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC----C
...(((((((((((((........)))....(((.....))).))))))))))...........(((((....(((.....)))...)))))..----. ( -24.10)
>DroSim_CAF1 45605 95 + 1
CCAAGCUGAAGUCGCAGUCGAAAAUGCAAAAUGCAAAAUGCAGGGCUUCAGUUCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC----C
...(((((((((((((........)))....(((.....))).))))))))))...........(((((....(((.....)))...)))))..----. ( -24.10)
>DroEre_CAF1 79753 88 + 1
CCAAGCUGAAGUCGUAGUCGAAAAUGCA-------AAAUGCAGGGCUUCAGCCCCAGGAACAAAAAGCUCUUUGGCCAUUUGCCCUCAGUUUGC----C
.((((((((..(((....)))...(((.-------....)))((((....(((..((((.(.....).)))).))).....)))))))))))).----. ( -25.10)
>DroYak_CAF1 71966 88 + 1
CCAAGCUGAAGUCGUAGUCGAAAAUGCA-------AAAUGCAGGGCUUCAGCCCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUGGC----C
((((.((((..(((....)))....(((-------((.(((.((((....))))..))).......(((....)))..)))))..)))))))).----. ( -24.60)
>DroAna_CAF1 58634 82 + 1
----ACUGAAGCCUUAGCCCGAAAUGCA--------GCUGCAG-----CCGCCACAGCAGCAAAAAGCUUUUUGGCAAUUUGCCUUCAAAUCGCUUCUC
----...(((((....(((.((((.((.--------(((((..-----........))))).....)))))).))).(((((....))))).))))).. ( -20.60)
>consensus
CCAAGCUGAAGUCGCAGUCGAAAAUGCA_______AAAUGCAGGGCUUCAGCCCCAGCAACAAAAAGCUUUUUGGCCAUUUGCCCUCAGUUUGC____C
.((((((((...............((((..........))))((((....(((..(((........)))....))).....))))))))))))...... (-16.63 = -17.68 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:17 2006