Locus 3069

Sequence ID	X_DroMel_CAF1
Location	8,201,217 – 8,201,323
Length	106
Max. P	0.844579

overview

Window 0

Location	8,201,217 – 8,201,323
Length	106
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	76.53
Mean single sequence MFE	-33.73
Consensus MFE	-7.74
Energy contribution	-8.46
Covariance contribution	0.72
Combinations/Pair	1.27
Mean z-score	-3.24
Structure conservation index	0.23
SVM decision value	0.76
SVM RNA-class probability	0.844579
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8201217 106 - 22224390
UUUGUUUUUGAACGCACCAUUUGCUUGGAGGGGGCGGGGUGGUUUU----UUCGCCCAGCCA-AAUGUUG---UGUUGGAAA-----AAGCCAGGGAUAUUAGUUUUAUUCUG-GGAUCA
....(((((.((((((.((((....(((...(((((..(......)----..)))))..)))-)))).))---)))).))))-----)..((.((((((.......)))))).-)).... ( -35.30)
>DroSec_CAF1 103289 101 - 1
UUUGUUUUUGAACGCACCAUUUGCUUGGGGG-----GGUUGCUUUU----UUCGCCCAGCCA-AAUGUUG---UGUUGGAAA-----AUGCCUGGGAUAUUAGUUUUAUUCCG-GGAUCA
...((((((.((((((.((((((.(((((.(-----((........----))).))))).))-)))).))---)))).))))-----)).(((((((((.......)))))))-)).... ( -40.50)
>DroSim_CAF1 83062 101 - 1
UUUGUUUUUGAACGCCCCAUUUGCUUGGGGG-----GUUUGGUUUU----UUUGCCCAGCCA-AAUGUUG---UGUUGGAAA-----AUGCCUGGGAUAUUAGUUUUAUUCUG-GGAUCA
...((((((.(((.(((((......)))))(-----(((.(((...----...))).)))).-.......---.))).))))-----)).((..(((((.......)))))..-)).... ( -33.00)
>DroEre_CAF1 93497 95 - 1
UUUGUUUUUGAACGCCCCAUUUGCUCGGGC-----------UUCCU----UUCGCCCAUCCA-AAUGUUG---UGUUGGAAA-----AAGCCUGGGAUAUUAGUUUUAUUCUG-GGAUCA
....(((((.(((((..((((((...((((-----------.....----...))))...))-))))..)---)))).))))-----)..((..(((((.......)))))..-)).... ( -30.30)
>DroYak_CAF1 92774 96 - 1
UUUGUUUUUGAACGCCCCAUUUGCUCGGGG-----------GUCCU----UUGGCCCAUCCAAAAUGUUG---UGUUGGAAA-----AAGCCUGGGAUAUUAGUUUCAUUCCG-GGAUCA
....(((((.(((((..(((((......((-----------(((..----..))))).....)))))..)---)))).))))-----)..((((((((.........))))))-)).... ( -28.60)
>DroAna_CAF1 142898 108 - 1
UUU---GUUGCAUGCCCCAUUUGGCACAGG--------GUCCUUUUCAUUCCUUCCCCCUCA-GGCGUUAUCCUGUUGGGAUUCCUGCACCCUGGGAUAUUAGUUUUAUUCCGGGGAUCA
...---..((((((((......)))).(((--------(..........))))..(((..((-((......))))..))).....))))((((((((((.......)))))))))).... ( -34.70)
>consensus
UUUGUUUUUGAACGCCCCAUUUGCUUGGGG_________UGGUUUU____UUCGCCCAGCCA_AAUGUUG___UGUUGGAAA_____AAGCCUGGGAUAUUAGUUUUAUUCCG_GGAUCA
......(((.((((...((((.(((.(((.........................))))))...))))......)))).))).........(((((((((.......))))))).)).... ( -7.74 =  -8.46 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:13 2006