Locus 3068

Sequence ID X_DroMel_CAF1
Location 8,198,688 – 8,198,778
Length 90
Max. P 0.805614
window5019

overview

Window 9

Location 8,198,688 – 8,198,778
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 83.86
Mean single sequence MFE -19.37
Consensus MFE -18.67
Energy contribution -18.83
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.96
SVM decision value 0.63
SVM RNA-class probability 0.805614
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8198688 90 - 22224390
GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUAUCCACACCCAUAC---------------
(((...(((((.((((((((((....)))))))))).)))))...)))..........................................--------------- ( -19.50)
>DroSec_CAF1 100911 88 - 1
GUCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUAUCCACACCCAU-----------------
.......((((.((((((((((....))))))))))(((........)))........))))..........................----------------- ( -16.30)
>DroSim_CAF1 80660 88 - 1
GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUAUCCACACCCAU-----------------
(((...(((((.((((((((((....)))))))))).)))))...)))........................................----------------- ( -19.50)
>DroEre_CAF1 91005 89 - 1
GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUU-UUACCCAUACCCACGC---------------
((.((((((((.((((((((((....))))))))))(((........)))..................)))))-))).))..........--------------- ( -20.10)
>DroYak_CAF1 90145 105 - 1
GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUACCCAUCCCCAACCCCAUAUCCAUACCCC
(((...(((((.((((((((((....)))))))))).)))))...)))......................................................... ( -19.50)
>DroAna_CAF1 138944 83 - 1
GGCUUAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCACAAGUUGCUUUUUGUUUCAGGUCCUUUCC-----CUCAU-----------------
(((...(((((.((((((((((....)))))))))).)))))...)))(((((......)))))....((......))-----.....----------------- ( -21.30)
>consensus
GGCUAAAAGCGCGCAAUUUGCAUAGUUGUAAGUUGCAUGUUUGUUGUCAUAAGUUUCUCGCUAUUCUAUGUUUUUUACCCACACCCAU_________________
(((...(((((.((((((((((....)))))))))).)))))...)))......................................................... (-18.67 = -18.83 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:12 2006