Locus 3066

Sequence ID X_DroMel_CAF1
Location 8,191,442 – 8,191,556
Length 114
Max. P 0.797819
window5016

overview

Window 6

Location 8,191,442 – 8,191,556
Length 114
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 66.96
Mean single sequence MFE -16.23
Consensus MFE -8.20
Energy contribution -7.00
Covariance contribution -1.21
Combinations/Pair 1.36
Mean z-score -1.79
Structure conservation index 0.51
SVM decision value 0.61
SVM RNA-class probability 0.797819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8191442 114 - 22224390
UACAUUUUAUAUCAAACUCAUUGUCUUGAAAUAUAACUUCCUUUGGCACUCACUCAAUUCAAUUGAAGAUAUACACAGCUAUUAAGCAAUCAAAUGCUUAUAUCAAGGCACAUA---
.....................((((((((..((((.((((..((((............))))..)))).)))).........((((((......))))))..))))))))....--- ( -20.10)
>DroSec_CAF1 93892 99 - 1
UACUUUUUAUAUCAACCUUAUUCUCUUGGAAAGCAACUUUCUUUGGCAAUCAAUCAAUUCAAUUAAAGAUAUAC-------------AAUCAAAUGCUUAUAU--AAGCACAUA---
.......((((((..............((((((...))))))((((.......))))..........)))))).-------------.......(((((....--)))))....--- (  -9.90)
>DroYak_CAF1 82606 105 - 1
UGCUUUUUAUAUCAAGCCCUUGCUGUUGAAAUGCAACUUCCUUUGGCACUUACUCAGUUUAGCUGAAGGCUCACAUUUAUAUU----------AUGUUUAUAU--AAACAUAUAAGC
(((.(((((.....(((....)))..))))).)))....((((..(((((.....)))...))..)))).............(----------((((((....--)))))))..... ( -18.70)
>consensus
UACUUUUUAUAUCAAACUCAUUCUCUUGAAAUGCAACUUCCUUUGGCACUCACUCAAUUCAAUUGAAGAUAUACA____UAUU____AAUCAAAUGCUUAUAU__AAGCACAUA___
(((((((((.................))))))))).((((..((((............))))..))))..........................(((((......)))))....... ( -8.20 =  -7.00 +  -1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:09 2006