Locus 3060

Sequence ID X_DroMel_CAF1
Location 8,179,303 – 8,179,393
Length 90
Max. P 0.566904
window5004

overview

Window 4

Location 8,179,303 – 8,179,393
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -21.62
Consensus MFE -15.22
Energy contribution -14.94
Covariance contribution -0.28
Combinations/Pair 1.22
Mean z-score -1.35
Structure conservation index 0.70
SVM decision value 0.07
SVM RNA-class probability 0.566904
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8179303 90 + 22224390
UCUG-------GCUGCUCUGCUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGAGCGGCAUUAUUGGCCCGCCGG
.(((-------((.((...)).((((.((((((((((((................))).((((.........)))))))))))))))))...))))) ( -23.39)
>DroPse_CAF1 85034 97 + 1
ACUGGCUCAAAGCUCAGAUGCUCCAAAUGGUGCUGCGUCAUCAACAUAAUCAUCAGACAUCAACAUUUCAAAUUGAGCAGCAUUAUUGGCCCACCCA
.(((((.....)).))).((..((((.((((((((((((................))).((((.........)))))))))))))))))..)).... ( -23.89)
>DroSim_CAF1 64970 90 + 1
UCUG-------GCUGCUCUGCUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGAGCGGCAUUAUUGGCCCGUCGG
.(((-------((.((...)).((((.((((((((((((................))).((((.........)))))))))))))))))...))))) ( -20.69)
>DroEre_CAF1 72599 85 + 1
UUUG-------GGUG-----CUUCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACUUUUCAAAUUGCGCGGCAUUAUUGGCCCGUCGG
....-------((.(-----((...(((((((((((((.....))...........(((..............)))))))))))))))))))..... ( -21.24)
>DroYak_CAF1 70414 75 + 1
UCUG-------GGUG-----CUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGCGCGGCAUUAUU----------
..((-------(...-----..)))(((((((((((((.....))...........(((..............))))))))))))))---------- ( -16.64)
>DroPer_CAF1 84681 97 + 1
ACUGGCUCAAAGCUCAGAUGCUCCAAAUGGUGCUGCGUCAUCAACAUAAUCAUCAGACAUCAACAUUUCAAAUUGAGCAGCAUUAUUGGCCCACCCA
.(((((.....)).))).((..((((.((((((((((((................))).((((.........)))))))))))))))))..)).... ( -23.89)
>consensus
UCUG_______GCUG___UGCUCCAAAUGAUGCUGCGUCAUCAACAUAAUCAUCGGGCAUCAACAUUUCAAAUUGAGCGGCAUUAUUGGCCCGCCGG
......................((((.((((((((((((................))).....((........)).)))))))))))))........ (-15.22 = -14.94 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:59 2006