Locus 3058

Sequence ID X_DroMel_CAF1
Location 8,178,213 – 8,178,307
Length 94
Max. P 0.602374
window5002

overview

Window 2

Location 8,178,213 – 8,178,307
Length 94
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 79.11
Mean single sequence MFE -27.18
Consensus MFE -19.54
Energy contribution -19.78
Covariance contribution 0.24
Combinations/Pair 1.18
Mean z-score -1.47
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.602374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8178213 94 - 22224390
GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCAGUUU--UUCUUU-UUUGGGGGAGGGGGUAAGUGGGUGGUGGUGCGA
((((((((....((.(((....(((((.((..........----...)).)))))..((--..((..-...))..))))).))...))))))))....... ( -30.02)
>DroSec_CAF1 81413 86 - 1
GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCAGUUUUUUUCUUU-UUUGG-----GGGGUAAGUGGGUGGGGG-----
.(((((((.(((((((((.......((.((....)).)).----.)))).))))).....(..(((.-...))-----)..)....)))))))...----- ( -26.00)
>DroSim_CAF1 63828 87 - 1
GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCAGUUUUUUUCUUUUUUUGG-----GGGGUAAGUGGGUGGGGG-----
.(((((((.(((((((((.......((.((....)).)).----.)))).)))))....((..((......))-----..))....)))))))...----- ( -26.20)
>DroEre_CAF1 71544 79 - 1
GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG----GGGGUGGUUCGGUUUUUUUU---------------GGGUAAGUGGGUGGUGG---GC
((((((((.....(((((.......((.((....)).)).----.)))))(..(((......))---------------)..)...))))))))..---.. ( -24.00)
>DroAna_CAF1 111004 83 - 1
GCCGCCUAAUGAGGGCCCAUAAUGAGCGACAAAUGUGGUGCAAGAGGGGGGCUGGGGCU----------GCGG-----GGCAUAAGUGGGUGGUGG---CA
((((((((......((((....((.((.((....)).)).)).....(.(((....)))----------.).)-----))).....))))))))..---.. ( -29.70)
>consensus
GCCGCCUAAUGAGCGCCCAUAAUGAGCGACAAAUGUGGUG____GGGGUGGUUCAGUUUUUUUCUUU_UUUGG_____GGGGUAAGUGGGUGGUGG_____
.(((((((.(((((((((.......((.((....)).))......)))).)))))..............((........)).....)))))))........ (-19.54 = -19.78 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:57 2006