| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,176,323 – 8,176,438 |
| Length | 115 |
| Max. P | 0.508724 |
| Location | 8,176,323 – 8,176,438 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 93.24 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -19.04 |
| Energy contribution | -18.96 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8176323 115 - 22224390 CAAAUAAUUUUGCUUCACAUUGCAAGCCUUCAAUGUC-AUGUCAUGUUUACUUAUUCUAAGCACCGCAUGACAACUUGGCUUCUUGCAGAUAAAUCAAGUUCAAAGGUGACAGCCG ...........(((((((..((((((((.....((((-((((..((((((.......))))))..))))))))....))))...))))((....))..........)))).))).. ( -29.70) >DroSec_CAF1 79643 115 - 1 CAAAUAAUAUUACUUCACAUUGCAAGCCUUCAAUGUC-AUGUCAUGUUUACUUAUUCUAAGCACCGCAUGACAACUUGGCUUCUUGAGAAUAAAUCAAGUUCAAAGGUGACAGCCG ..............((((.....(((((.....((((-((((..((((((.......))))))..))))))))....)))))(((((.......))))).......))))...... ( -27.80) >DroSim_CAF1 62040 116 - 1 CAAAUAAUAUUACUUCACAUUGCAAGCCUUCAAUGUCAAUGUCAUGUUGACUUAUUCUAAGCACCGCAUGACAACUUGGCUUCUUGCGAAUAAAUCAAGUUCAAAGGUGACAGCCG ..............((((...(((((........(((((((((((((((.((((...))))))..))))))))..)))))..)))))((((.......))))....))))...... ( -24.40) >DroEre_CAF1 69716 115 - 1 CAAAUAAUAUUACUUCACACUGCAAGCCUUCACUGUC-AUGUCAUGUUUACUUAUUUUAAGCACCGCAUGACAACUUUGCUUCUUGCUGAUAAAUCAAGUUCAAAGGUGACAGCAA .........................((..((((((((-((((..((((((.......))))))..)))))))).(((((...((((.(.....).))))..)))))))))..)).. ( -27.10) >DroYak_CAF1 67470 115 - 1 CAAAUAAUAUUAUUUCACACUGCAAGCCUUCACUGUC-AUGUCAUGUUUACUUAUUCUAAGCGUCGCAUGACAACUUUGCUUCUUGCUGAUAAAUCAAGUUCAAAGGUGACAGCAG .........................((..((((((((-((((.(((((((.......))))))).)))))))).(((((...((((.(.....).))))..)))))))))..)).. ( -28.60) >consensus CAAAUAAUAUUACUUCACAUUGCAAGCCUUCAAUGUC_AUGUCAUGUUUACUUAUUCUAAGCACCGCAUGACAACUUGGCUUCUUGCGGAUAAAUCAAGUUCAAAGGUGACAGCCG ................((((((........))))))...((((((((...((((...))))....))))))))....((((.((((.........))))......(....))))). (-19.04 = -18.96 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:55 2006