Locus 3055

Sequence ID X_DroMel_CAF1
Location 8,173,861 – 8,173,955
Length 94
Max. P 0.877248
window4998

overview

Window 8

Location 8,173,861 – 8,173,955
Length 94
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 93.72
Mean single sequence MFE -23.56
Consensus MFE -19.70
Energy contribution -19.86
Covariance contribution 0.16
Combinations/Pair 1.06
Mean z-score -1.63
Structure conservation index 0.84
SVM decision value 0.90
SVM RNA-class probability 0.877248
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8173861 94 + 22224390
GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCGACUGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACC----
((......)).((((....................((((((..((....))..)))))).............(((((......)))))))))..---- ( -21.90)
>DroSec_CAF1 77129 94 + 1
GCAAUAAAGCCUGGCACAGACAAUAACAGUUAACCUCGGUCCUGGAAAGCCUCGCCAGGAUCCACAUCAUCCCAGGAUUUUAUUUCUGGCCACC----
((......)).((((.((((.(((((...........((((((((.........))))))))......(((....))).)))))))))))))..---- ( -25.00)
>DroSim_CAF1 59653 94 + 1
GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCGCCAGGAUCCUCAUCAUCCCAGGAUUUCAUUUCUGGCCACC----
((......)).((((.((((.................((((((((.........))))))))......(((....)))......))))))))..---- ( -23.70)
>DroEre_CAF1 67237 94 + 1
GCAAUAAAGCCUGGCAUAGACAAUAACAGCUAACCUCGGUGCUGGAAAGCCUCUGCAGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACC----
((......)).((((..................((((((.(((....)))..))).))).............(((((......)))))))))..---- ( -24.20)
>DroYak_CAF1 65003 98 + 1
GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCUGCAGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACCGAAC
((......)).((((......................(((((((.(.......).)))))))..........(((((......)))))))))...... ( -23.00)
>consensus
GCAAUAAAGCCUGGCACAGACAAUAACAGCUAACCUCGGUCCUGGAAAGCCUCGCCAGGAUCCUCAUCAUCCCAGGAUUUCAUUCCUGGCCACC____
((......)).((((......................(((((((...........)))))))..........(((((......)))))))))...... (-19.70 = -19.86 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:54 2006