Locus 3052

Sequence ID X_DroMel_CAF1
Location 8,169,056 – 8,169,158
Length 102
Max. P 0.506506
window4993

overview

Window 3

Location 8,169,056 – 8,169,158
Length 102
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 83.10
Mean single sequence MFE -21.32
Consensus MFE -12.46
Energy contribution -12.68
Covariance contribution 0.23
Combinations/Pair 1.30
Mean z-score -2.33
Structure conservation index 0.58
SVM decision value -0.05
SVM RNA-class probability 0.506506
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8169056 102 - 22224390
C-------------CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC--GGACUCGGGACUUU-UCCCAUUUUCCUC
.-------------.((((...................(((((((((............)))))....))))...(((.......)))--))))..((((....-))))......... ( -19.10)
>DroSec_CAF1 72420 102 - 1
C-------------CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC--GGAUUCGGGACUUU-UCCCAUUUUCCUC
.-------------.(((((.(((((............(((((((((............)))))....))))...((.....))..))--)))...)))))...-............. ( -19.20)
>DroSim_CAF1 54469 102 - 1
C-------------CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC--GGACUCGGGACUUU-UCCCAUUUUCCUC
.-------------.((((...................(((((((((............)))))....))))...(((.......)))--))))..((((....-))))......... ( -19.10)
>DroEre_CAF1 62059 101 - 1
C-------------CAUCCCUUCCGCCACAUCUUCCCCUGCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAGGCCAGC--GGACUCGGGACUUU--UCCAUUUUCCUU
.-------------..((((.(((((.....((((....(((((..(..((.(((......))).))..)..)))))..))))...))--)))...))))....--............ ( -23.40)
>DroYak_CAF1 59996 101 - 1
C-------------CAUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUACAGCCAGC--GGACUCGGGACUUU--CCCAUUUUCCUC
.-------------.......(((((............(((((((((............)))))....))))...((.....))..))--)))...(((.....--)))......... ( -16.40)
>DroAna_CAF1 99398 112 - 1
CCAUCUCGGAGAAAAGUCCUUGUUGGCCCGCGUU---CUUCCACAGCUUUAUAUCAUUUGCAAUUUAUUGAAAUUGCUUGAAGCCAGCCAGAAUUGAGGGGUUUUUCUCUUU---CUU
.......((((((((..((((((((((..((...---........))......(((...(((((((....))))))).))).))))))........))))..))))))))..---... ( -30.70)
>consensus
C_____________CGUCCUUUUCGCCACAUCUUCCCCUUCAAUCGCUUUAUAUCAUUUGCGAUUUAUUGAAAUUGCUUGAAGCCAGC__GGACUCGGGACUUU_UCCCAUUUUCCUC
.............................................((((((........(((((((....))))))).))))))......(((...((((.....))))....))).. (-12.46 = -12.68 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:49 2006