Locus 3050

Sequence ID X_DroMel_CAF1
Location 8,167,318 – 8,167,425
Length 107
Max. P 0.604665
window4991

overview

Window 1

Location 8,167,318 – 8,167,425
Length 107
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 75.54
Mean single sequence MFE -25.51
Consensus MFE -8.17
Energy contribution -9.13
Covariance contribution 0.96
Combinations/Pair 1.35
Mean z-score -1.77
Structure conservation index 0.32
SVM decision value 0.14
SVM RNA-class probability 0.604665
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8167318 107 - 22224390
GAACUGUGACGUUUAGGAGAUGUCAGUUGAUUUACAUCAAUCGCUUUCGCCUUAUG----------AUC-GUAAAUAAAUAAAACGAUACGAGAGCAAAUGUGAAUGUCAUUUGGAUU
...((((((((((((.(.(((((.((.....)))))))....(((((((.......----------(((-((...........))))).)))))))...).))))))))))..))... ( -25.00)
>DroSec_CAF1 70706 106 - 1
GAACU--GGCGUUCACGAGAUGUCAGUCGAUUUACAUCAAUCGCUUUUGCCUUAUG----------AUGAAUAAAUAAAUAAAACGAUACGGUAGCAAAUGUGAAUGUCAUGUGGAUU
((.((--((((((.....))))))))))(((((((((((.((((.(((((.((((.----------....)))).........((......)).))))).)))).))..))))))))) ( -24.20)
>DroSim_CAF1 52709 106 - 1
GAACU--GGCGUUCGCGAGAUGUCAGUCGAUUUACAUCAAUCGCUUUUGCCUUAUG----------AUGAAUAAAUAAAUAACACGAUACGAGAGCAAAUGUGAAUGUCAUGUGGAUU
((.((--(((((.(....))))))))))(((((((((((.((((.(((((((..((----------.((...............)).))..)).))))).)))).))..))))))))) ( -27.96)
>DroEre_CAF1 60392 97 - 1
G-ACU--GGCAUGGAUGUGAUGUCAGUCGAUUUACAUCAAUCG-------AUUAUG----------AUG-GCAAAUAAAUAGAAGGGUACGAAAGCAAAUGCGAAUGCGAUGUGGAUU
(-(((--(((((.......)))))))))((((((((((.(((.-------.....)----------)).-(((...........(....)....((....))...))))))))))))) ( -25.80)
>DroYak_CAF1 57927 100 - 1
GAACU--GGCAUGCAUGAGAUGUCAUUCGAUUUACAUCGAUCGCUUUCG-AUUAUGUUCGUGAAUUAUG-GUAAAUGAAUAAAACGAU--------------GAAUGCGAUGUGGAUA
(((.(--(((((.......))))))))).((((((((((....(..(((-.((.(((((((........-....))))))).))))).--------------)....)))))))))). ( -24.60)
>consensus
GAACU__GGCGUUCACGAGAUGUCAGUCGAUUUACAUCAAUCGCUUUCGCCUUAUG__________AUG_GUAAAUAAAUAAAACGAUACGAGAGCAAAUGUGAAUGUCAUGUGGAUU
.......((((((((((.(((((..........))))).((((........((((...................))))......))))...........))))))))))......... ( -8.17 =  -9.13 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:47 2006