Locus 3049

Sequence ID X_DroMel_CAF1
Location 8,164,195 – 8,164,285
Length 90
Max. P 0.545126
window4990

overview

Window 0

Location 8,164,195 – 8,164,285
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -14.88
Consensus MFE -10.84
Energy contribution -11.04
Covariance contribution 0.20
Combinations/Pair 1.10
Mean z-score -1.69
Structure conservation index 0.73
SVM decision value 0.02
SVM RNA-class probability 0.545126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8164195 90 + 22224390
UUAGUGGCUAAUAAAUCCCACUCCCCCAUUUAUGCUAUGUUUCCUCGAGCAGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAUUGCU
...((((((.((((((...........))))))(((.((......))))))))))).....(((......(((.....))).....))). ( -14.40)
>DroSec_CAF1 67500 87 + 1
UUAGUGGCUAAUAAAUCCCAC-CC--CAUUUAUGCUACGUUUCCUCGAGCGGCCACAAAUCGCAGCAAUAAUGUUAAACAUACAAUUGCU
...((((((.((((((.....-..--.))))))(((.((......))))))))))).......((((((.(((.....)))...)))))) ( -20.30)
>DroSim_CAF1 49141 89 + 1
UUAGUGGCUAAUAAAUCCCAC-CCCUCAUUUAUGCUACGUUUCCUCGAGCGGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAUUGCU
...((((((.((((((.....-.....))))))(((.((......))))))))))).....(((......(((.....))).....))). ( -16.60)
>DroEre_CAF1 57429 87 + 1
UUAGUGGCUAAUAAAUCCAUC---CCCAUUUCUGCUAGGUUUCCUUGAGCAGCCACAAAUCGCACAAAUAAUGUUAAACAUACAAUUGCA
...((((((...((((.....---...))))..((((((...)))..))))))))).....(((......(((.....))).....))). ( -13.70)
>DroYak_CAF1 54768 89 + 1
UUAGUGACUAAUAAAUGCCAC-CACCCAUUUCUGUUAGUUUUCCUCGAGCAGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAAUGCA
.....((((((((((((....-....))))..))))))))........(((((........)).......(((.....))).....))). (  -9.40)
>consensus
UUAGUGGCUAAUAAAUCCCAC_CCCCCAUUUAUGCUACGUUUCCUCGAGCAGCCACAAAUCGCACCAAUAAUGUUAAACAUACAAUUGCU
...((((((.((((((...........))))))(((...........))))))))).....(((......(((.....))).....))). (-10.84 = -11.04 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:46 2006