| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,144,195 – 8,144,294 |
| Length | 99 |
| Max. P | 0.846993 |
| Location | 8,144,195 – 8,144,294 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 90.44 |
| Mean single sequence MFE | -43.38 |
| Consensus MFE | -30.12 |
| Energy contribution | -30.40 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8144195 99 + 22224390 GG-GCUCGGAAGGCCAUUGGUUAGGUGGCCCCAAAUUGUGGGUGGCUGGUGGGCGU-AGCAGGUUUAGAGACUUCGCAGCCGGCGGCAGCUUUUGUGAGUG ..-(((((.(((((((((.....)))))))(((.....)))((.((((((..(((.-...(((((....)))))))).)))))).)).....)).))))). ( -37.30) >DroSec_CAF1 47636 96 + 1 UG-GCUCGGAAGGCCAUUGGUUAGGUGGC--CAAAUUGUGGGUGGCUG-UGGGCGA-AGCAGGUUUAGAGACUUCGCAGCCGGCGGCCGCUUUUGUGAGUG ..-(((((.(((((((((.....))))))--).......(((((((((-(.(((..-.(((((((....))))).)).))).)))))))))))).))))). ( -45.30) >DroSim_CAF1 28990 96 + 1 UG-GCUCGGAAGGCCAUUGGUUAGGUGGC--CAAAUUGUGGGUGGCUG-UGGGCGA-AGCAGGUUUAGAGACUUCGCAGCCGGCGGCCGCUUUUGUGAGUG ..-(((((.(((((((((.....))))))--).......(((((((((-(.(((..-.(((((((....))))).)).))).)))))))))))).))))). ( -45.30) >DroEre_CAF1 38243 95 + 1 GG-GCUCGGAAGGCCGUUGGUUGGGCGGC--CGAAUUGUGGGUGGCUG-UGGG--UGGGCAGGUUUAGAGACUCCGCAGCCGGCGGCCGCUUUUGUGAGUG ..-(((((.(((((((((.....))))))--).......(((((((((-(.((--(..((.((((....))))..)).))).)))))))))))).))))). ( -44.30) >DroYak_CAF1 34886 98 + 1 GGCGCUCGCAAGGCCGUUGGUUAGGUGGC--CAAAUUGUGGGCGCUUG-UGGGCGUGGGCAGGUUUAGAGACUUCACAGCCGGCGGCCGCUUUUGUGAGUG ..(((((((((((((((((((((((((.(--((.....))).)))))(-(((((....)).((((....)))))))))))))))))))....))))))))) ( -44.70) >consensus GG_GCUCGGAAGGCCAUUGGUUAGGUGGC__CAAAUUGUGGGUGGCUG_UGGGCGU_AGCAGGUUUAGAGACUUCGCAGCCGGCGGCCGCUUUUGUGAGUG ...(((((.(((((((((.....))))))...........((((((((.(.(((....(((((((....))))).)).))).)))))))))))).))))). (-30.12 = -30.40 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:40 2006