| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,124,783 – 8,124,877 |
| Length | 94 |
| Max. P | 0.998524 |
| Location | 8,124,783 – 8,124,877 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 66.38 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -13.43 |
| Energy contribution | -13.80 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.70 |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.998524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8124783 94 + 22224390 GGAAAUGUUCAAUGAUGGAUAUUUCCGGCUAAGCUUUU---GCCUUUUUUUUU-CGUUUUUUUUUUUGCCAUUCCAUUUUGUUGGUCCAACAAUUGGC-------- (((((((((((....)))))))))))(((.........---))).........-.............((((.......((((((...)))))).))))-------- ( -22.10) >DroSec_CAF1 27660 86 + 1 GGAAAUGUUCAAUGAUGGAUAUUUCCGGCUAAGCUUUU---CUCUUUUUUUUUUUGUUUUUU---------CUCCAUUUUGUUGGCCCAACAAUUGGC-------- (((((((((((....)))))))))))((..((((....---..............))))..)---------).(((..((((((...)))))).))).-------- ( -18.27) >DroSim_CAF1 16265 78 + 1 GGAAAUGUUCAAUGAUGGAUAUUUCCGGCUAAGCUUUU---CCCUUUUU----------UUU---------CUCCAUUUCGUUGGCCCAACAAUUGGCAG------ (((((((((((....)))))))))))((((((......---........----------...---------..........)))))).............------ ( -16.73) >DroAna_CAF1 21541 91 + 1 GGAAAUGGCCAAUGAUGGACUCUUCCGGUUAAUCCGGGAAACACUUUUAUUU--UG-------------AAUAUUAUUUUAUUGGGACAUUUAUUGGGAUAUUUAU ..(((((.(((((((((..((.((((((.....)))))).............--..-------------((((......))))))..)).)))))))..))))).. ( -19.60) >consensus GGAAAUGUUCAAUGAUGGAUAUUUCCGGCUAAGCUUUU___CCCUUUUUUUU__UG___UUU_________CUCCAUUUUGUUGGCCCAACAAUUGGC________ (((((((((((....)))))))))))...............................................(((..((((((...)))))).)))......... (-13.43 = -13.80 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:33 2006