| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 980,232 – 980,324 |
| Length | 92 |
| Max. P | 0.758342 |
| Location | 980,232 – 980,324 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 82.78 |
| Mean single sequence MFE | -13.91 |
| Consensus MFE | -8.96 |
| Energy contribution | -9.65 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.758342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 980232 92 + 22224390 GUUGGCACGACAAAAAAUCAAAAUUAAUGUUAGCAUCAUCGUGUGUCUACACAGAAAGAGAAAAAACCACACGAACAGUGCUAUAAAAAUAU ..((((((..................(((....)))..((((((((((........)))........)))))))...))))))......... ( -16.30) >DroSec_CAF1 63127 88 + 1 GAUGGUACCACAAAAAAUCAAAAUUAAUGUUAACA---UCGUGUGUCUACACGGGAAAAGAAAAAAACACACGAACAGUGCUAUAAAAAUC- .(((((((...................((....))---((((((((....................))))))))...))))))).......- ( -14.85) >DroSim_CAF1 42282 88 + 1 GUUGGCACCACAAAAAAUCAAAAUUAAUGUUAACA---UCGUGUGUCUACACGGGAAAAGAAAAAACCACACGAACAGUGCUAUAAAAAUC- ..((((((...................((....))---((((((((((.....)))...........)))))))...))))))........- ( -14.30) >DroYak_CAF1 68587 86 + 1 UUUCGCACGACAAAAAACCAAAAUAAUAGCUAACA---UCGUGUGUCUACACAGAAAA--CAAAACCUACACGAUCAGCUCUUUAAGAAUC- .......................(((.((((...(---((((((((((....)))...--.......)))))))).))))..)))......- ( -10.20) >consensus GUUGGCACCACAAAAAAUCAAAAUUAAUGUUAACA___UCGUGUGUCUACACAGAAAAAGAAAAAACCACACGAACAGUGCUAUAAAAAUC_ ..((((((....................(....)....(((((((......................)))))))...))))))......... ( -8.96 = -9.65 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:13 2006