| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,111,438 – 8,111,543 |
| Length | 105 |
| Max. P | 0.885269 |
| Location | 8,111,438 – 8,111,543 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.79 |
| Mean single sequence MFE | -39.22 |
| Consensus MFE | -23.55 |
| Energy contribution | -23.97 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8111438 105 + 22224390 UGCACCAGCACAAUCACGGGCUGCGGAGAAAAUCCGAGUCCGUCCUGUCCACCGACUCGGACAUCCGCUUCACCCGCCGGAAAUUGGGCGAUGGCCAAAAGUGCG .((((..((...(((..(((..(((((.....((((((((.((.......)).))))))))..)))))....)))(((........)))))).)).....)))). ( -40.50) >DroEre_CAF1 2094 105 + 1 UGCACCAGCACAACCACGGCUUGAGGCGAAAGUCCGAGUCCGUCCUGUCCACCGACUCGGACAUCCGCUUCACGCGCCGGAAACUGGGCGAUGGCCAAAAGUGCG .......((((......(((((((((((...(((((((((.((.......)).)))))))))...)))))))(((.(((....).)))))..))))....)))). ( -45.30) >DroWil_CAF1 333 105 + 1 UGCAUAGUCACAGCCAAGGUUUACGUAGAAAAUCUGAAUCGGUGCUAUCCACCGAUUCGGAUAUACGUUUCACUCGUCGCAAAUUGGGCGAUGGACAGAAAUGUG .((((.(((........(((..(((((....(((((((((((((.....))))))))))))).)))))...)))((((((.......)))))))))....)))). ( -36.30) >DroYak_CAF1 2738 105 + 1 UGCACCAGCACAAUCAUGGCUUGCGGAGAAAAUCCGAAUCUGUGCUGUCCACCGACUCGGAUAUUCGCUUCACCCGCCGGAAACUGGGCGAUGGCCAGAAGUGCG .......((((..((.(((((.(((((....((((((.((.(((.....))).)).)))))).))))).((.((((..(....))))).)).))))))).)))). ( -38.30) >DroAna_CAF1 4120 105 + 1 UGCACAAUAAUCAUGGAGGUCUCCGCCGGAAAUCAGAGUCCGUACUCUCCACCGACUCGGACAUCCGGUUCACGCGCCGGAAACUGGGCGACGGCCAGAAGUGCG .((((.........(((....)))((((....((((.(((((...((......))..))))).((((((......))))))..))))....)))).....)))). ( -39.30) >DroPer_CAF1 13623 105 + 1 UGCACAACCAUGCCCAUGGUCUGAGAAGAAAAUCGGAGUCUGUUCUGUCCACGGAUUCGGAUAUACGCUUCACCCGCCGCAAGCUGGGAGACGGUCAGAAAUGCG .(((...((((....))))(((((((((...(((.((((((((.......)))))))).))).....)))).((((.(....).))))......)))))..))). ( -35.60) >consensus UGCACAAGCACAACCAAGGUCUGCGGAGAAAAUCCGAGUCCGUCCUGUCCACCGACUCGGACAUCCGCUUCACCCGCCGGAAACUGGGCGAUGGCCAGAAGUGCG .((((............((...(((((....(((((((((.((.......)).))))))))).))))).))...((((........))))..........)))). (-23.55 = -23.97 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:29 2006