Locus 3036

Sequence ID X_DroMel_CAF1
Location 8,110,683 – 8,110,786
Length 103
Max. P 0.805369
window4969

overview

Window 9

Location 8,110,683 – 8,110,786
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.20
Mean single sequence MFE -25.32
Consensus MFE -13.55
Energy contribution -14.80
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -1.76
Structure conservation index 0.54
SVM decision value 0.63
SVM RNA-class probability 0.805369
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8110683 103 + 22224390
GCAACGCCGCCUCCUG---------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA--------AAAUACCCAGAAAAC
((..((((((.....)---------)............((((((...)))))))))).((((((......))))))...))................--------............... ( -23.60)
>DroSec_CAF1 1340 103 + 1
GCAACGCCGCCCCCUG---------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA--------AAAUACCCAGAAAAC
((..((((((.....)---------)............((((((...)))))))))).((((((......))))))...))................--------............... ( -23.60)
>DroSim_CAF1 1527 103 + 1
GCAACGCCGCCCCCUG---------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA--------AAAUACCCAGAAAAC
((..((((((.....)---------)............((((((...)))))))))).((((((......))))))...))................--------............... ( -23.60)
>DroEre_CAF1 1351 99 + 1
GCAACGCCGCC--CUGC--------CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUU--AAUUAAUUGCUGAACGUAAAUACAC---------AGCACAAGUAACCAGAAAAC
((..((((((.--....--------...))........((((((...)))))))))).((((((--....))))))...............---------.))................. ( -22.90)
>DroYak_CAF1 1916 110 + 1
GCAACGCCGCC--CUGC--------CAUGCUUCAUUAAGUUGGCAGCGCCAACGGCGCGCAAUUUGAAUUAAUUGCUGGGCUUGAAUACACACCAAAUGCAGCGCAAGUAACCAGAAAAC
(((.....(((--((((--------((.((((....)))))))))(((((...)))))((((((......)))))).))))(((.........))).))).((....))........... ( -34.00)
>DroPer_CAF1 12873 98 + 1
GCAG--GAGCC--CGGCUCAGCUGUUCCAUAUCAUUAAGCUGGCAACGCCAGCG-CGCACUUUUUGAUUCCAUUCGAGAAAUUAAAUUU--ACCAAA--------AGA-------AAAGU
((.(--((((.--.(((...))))))))..........((((((...)))))))-)....(((((((......))))))).........--......--------...-------..... ( -24.20)
>consensus
GCAACGCCGCC__CUG_________CACGCUUCAUUAAGUUGGCAACGCCAACGGCGCGCAAUUUGAAUUAAUUGCUAGGCAUAAAUACACACCAGA________AAAUACCCAGAAAAC
....((((((..................))........((((((...)))))))))).((((((......))))))............................................ (-13.55 = -14.80 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:28 2006