| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,106,211 – 8,106,313 |
| Length | 102 |
| Max. P | 0.826252 |
| Location | 8,106,211 – 8,106,313 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -20.28 |
| Energy contribution | -22.37 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8106211 102 + 22224390 CACGAUUGAGUGGCAGCUGCGACUGAGAAAACUGAGGAAACUGAGGAAACCGAGAAAAACUUCAAGAAA------CACGGAGUCUGCGGCGGCUGCUUGCAGGGAAAU .......(((..((.(((((((((.......((.((....)).))....(((.................------..))))))).))))).))..))).......... ( -30.21) >DroSec_CAF1 11464 107 + 1 CACGAUUGAGUGGCAGCUGCGACUGAGAAAACUGAGAAAACUGAGGAAACCGAGAA-AACUUCAAGAAAACUUCAGACGGAGUCUGCGGCGGCUGCUUGAAGGGAAAU .....(..((..((.(((((((((..(....(((((......(.(....))(((..-...)))........))))).)..)))).))))).))..))..)........ ( -28.80) >DroEre_CAF1 10957 82 + 1 CACGAUUGAGUGGCAGCUGCGACUGAGAAAACCGAGAAAAC--------------------UCAAGAAA------CACGGAGUCUGCGGCGGCUGCUUGAAGGGAAAU .....(..((..((.(((((((((..(.....)(((....)--------------------))......------.....)))).))))).))..))..)........ ( -24.40) >consensus CACGAUUGAGUGGCAGCUGCGACUGAGAAAACUGAGAAAACUGAGGAAACCGAGAA_AACUUCAAGAAA______CACGGAGUCUGCGGCGGCUGCUUGAAGGGAAAU .....(((((..((.(((((((((..(....((.((....)).))......(((......)))..............)..)))).))))).))..)))))........ (-20.28 = -22.37 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:25 2006