Locus 3032

Sequence ID X_DroMel_CAF1
Location 8,105,705 – 8,105,811
Length 106
Max. P 0.533083
window4965

overview

Window 5

Location 8,105,705 – 8,105,811
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.50
Mean single sequence MFE -27.40
Consensus MFE -15.99
Energy contribution -16.49
Covariance contribution 0.50
Combinations/Pair 1.13
Mean z-score -1.70
Structure conservation index 0.58
SVM decision value -0.00
SVM RNA-class probability 0.533083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8105705 106 + 22224390
CCAAAAGAUAAUCCAGUACGCACGUAUGUACCCAUACGAUUGAGGGGCAAAAGGCGUGCUGUUCAGUUUUGAAAAAACAUUUUAGAUAUUUUUGAAAA--------------GAAGAUUG
........(((((((((((((.(...((..((((......)).))..))...)))))))))(((.((((.....)))).(((((((....))))))).--------------)))))))) ( -24.50)
>DroSec_CAF1 10938 113 + 1
ACAAAAGAUAAUCCAGCACGCACGU----AGCCAUGCGAUUGAGGGGCA---UGCGUGCUAUUCAGUUUUGAAAACAUUUUUUAGAUAUUUUUGAAAAGCUGUUAAAAUUUUGAAGAUUG
........(((((.((((((((...----.(((...(....)...))).---)))))))).(((((..((...(((((((((((((....))))))))).))))..))..)))))))))) ( -28.30)
>DroSim_CAF1 16975 106 + 1
CCAAAAGAUAAUCCAGCACGCACGU----AGCCAUGCGAUUGAGGGGCAAUAGGCGUGCUAUUCAGUUUUGAAAACAUUUUUUAGAAAUUUUUGAAAAGCA----------AGAAGAUUG
........(((((.(((((((..((----.(((...(....)...))).))..))))))).....(((((..(((.(((((...))))).)))..))))).----------....))))) ( -23.60)
>DroEre_CAF1 10448 110 + 1
-----AGAUAAUCCAGCACGCACGU----ACCCAUGCGAUUGGGGGCAAAUAGGCGUGCUGGCAAGUUUUGAAAAAA-AUCUUGGAUAUUUUUGAGUAGUUUUCCAACGCAUGAUGAUUG
-----.......(((((((((..(.----.((((......))))..)......)))))))))((.((.(((.((((.-..((..((....))..))...)))).))).)).))....... ( -33.20)
>consensus
CCAAAAGAUAAUCCAGCACGCACGU____ACCCAUGCGAUUGAGGGGCAAUAGGCGUGCUAUUCAGUUUUGAAAAAAUAUUUUAGAUAUUUUUGAAAAGCU__________UGAAGAUUG
........(((((((((((((.........(((..........))).......))))))))..................(((((((....)))))))..................))))) (-15.99 = -16.49 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:24 2006