Locus 3030

Sequence ID X_DroMel_CAF1
Location 8,102,911 – 8,103,031
Length 120
Max. P 0.962534
window4962

overview

Window 2

Location 8,102,911 – 8,103,031
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.83
Mean single sequence MFE -31.76
Consensus MFE -29.74
Energy contribution -30.34
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.94
SVM decision value 1.54
SVM RNA-class probability 0.962534
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8102911 120 + 22224390
CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGACGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCCCCAUUAUUGUCUUAG
.(...((((((((((..(((((((((((.....))))).))).((.((..(((((....)))))..)).))...)))))))))))))...).(((..((((....))))....))).... ( -31.70)
>DroSec_CAF1 8248 120 + 1
CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUCUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCUCCAUUAUUGUCUUAG
.(...((((((((((..((((((..(((.....)))...)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... ( -27.30)
>DroSim_CAF1 13545 120 + 1
CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCCCCAUUAUUGUCUUAG
.(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... ( -34.10)
>DroEre_CAF1 7823 119 + 1
CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGCCUUGUGG-GCCCCAUUAUUGUCUUAG
.(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((.....)-))................ ( -30.90)
>DroYak_CAF1 11185 120 + 1
CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUUGUGGGGCCCCAUUAUUGUCUUAG
.(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... ( -34.80)
>consensus
CGUUUGGCUUAGAAACAAACGCAACAACUUUCAGUUGUCUGCCGCCGAUUUUGCUUUGCGGCGAUUUUUUCCAUGUUUUUCUAGGCUUAUCUGACUCGUGGGGCCCCAUUAUUGUCUUAG
.(...((((((((((..(((((((((((.....))))).)))(((((...........)))))...........)))))))))))))...).(((..((((....))))....))).... (-29.74 = -30.34 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:21 2006