Locus 303

Sequence ID X_DroMel_CAF1
Location 979,860 – 979,969
Length 109
Max. P 0.811094
window458

overview

Window 8

Location 979,860 – 979,969
Length 109
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 90.42
Mean single sequence MFE -38.74
Consensus MFE -31.40
Energy contribution -32.14
Covariance contribution 0.74
Combinations/Pair 1.03
Mean z-score -1.64
Structure conservation index 0.81
SVM decision value 0.65
SVM RNA-class probability 0.811094
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 979860 109 + 22224390
GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCCAGUCAAUCAGCUUCAGGUUUUCUCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG
..........((((((((((((((((((..(...((.(((....))).))....(((((..((......))..)))))..)..)----))))))..)).))))).)))).... ( -41.20)
>DroSec_CAF1 62770 94 + 1
GGCCAAGUUAGAACGGUUCCAGU---------------GGGCAGCCAGUCAAUCAGCUUCAGGUUUACUCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG
..........(((((((((((((---------------((((..((.(.....)(((((..((......))..)))))..))..----))))))..)).))))).)))).... ( -30.60)
>DroSim_CAF1 41910 109 + 1
GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCCAGUCAAUCAGCUUCAGGUUUUCCCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG
..........((((((((((((((((((..(...((.(((....))).))....((((((.((.....)).).)))))..)..)----))))))..)).))))).)))).... ( -40.70)
>DroEre_CAF1 76076 109 + 1
GGCCACGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCUAGUCAAUCAGCUUCAGGUUUUCUCCGCAAGCUUAGGGA----GCCCACAAUGAGAACCAGUUCGCAG
..........((((((((((((((((((..(...((((..((((((........))))...((......))))..)))).)..)----))))))..)).))))).)))).... ( -39.80)
>DroYak_CAF1 68195 113 + 1
GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCUAGUCAAUCAGCUUCAGGUUUUCUCCGCCAGCUUAGGGAGUGAGUCCACGAUGAGAACCAGUUCGCAG
..........((((((((((((((((((((((..((((.(((((((........))))...((......))))).))))..)))..))))))))..)).))))).)))).... ( -41.40)
>consensus
GGCCAAGUUAGAACGGUUCCAGUGGGCUUUCCACGAGUGGGCAGCCAGUCAAUCAGCUUCAGGUUUUCUCCGCAAGCUUAGGGA____GCCCACAAUGAGAACCAGUUCGCAG
..........(((((((((((((((.....))))..((((((......((..(.((((...((......))...)))).)..))....))))))..)).))))).)))).... (-31.40 = -32.14 +   0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:12 2006