Locus 3029

Sequence ID X_DroMel_CAF1
Location 8,099,350 – 8,099,445
Length 95
Max. P 0.650930
window4961

overview

Window 1

Location 8,099,350 – 8,099,445
Length 95
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 81.16
Mean single sequence MFE -21.12
Consensus MFE -18.42
Energy contribution -19.02
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.87
SVM decision value 0.24
SVM RNA-class probability 0.650930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8099350 95 + 22224390
---UCAUUUCGGUUUU--UUUGGUUUUCGUUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC
---.............--............(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). ( -21.20)
>DroSec_CAF1 5152 74 + 1
---UCU-----------------------UUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC
---...-----------------------.(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). ( -21.20)
>DroSim_CAF1 9772 74 + 1
---UCU-----------------------UUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC
---...-----------------------.(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). ( -21.20)
>DroEre_CAF1 5382 94 + 1
UGGUCAUUUCGUUU------UAGUUUUCUUUGGCUCAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGCUGAGCAGC
((.(((...(((((------.((((.....((((.((....))))))...)))).)))))((((((((((..........))))))))..))))).)).. ( -19.70)
>DroYak_CAF1 8646 100 + 1
UGGUCAUUUCGGUUUUAGCUUAGUUUUCUUUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCAGC
((..((....(((...((((.((....))..)))).)))..))..))....((((((.(((.((((((((..........)))))))))))))))))... ( -22.30)
>consensus
___UCAUUUCG_UU______U_GUUUUC_UUGGCUUAUUUUUGGUCACUCGGCUUAAACGGCUUUCCAAUCGCUGUCAUAAUUGGAAAUCGUUGAGCUGC
..............................(((((.......)))))..((((((((.(((.((((((((..........))))))))))))))))))). (-18.42 = -19.02 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:20 2006