Locus 3028

Sequence ID X_DroMel_CAF1
Location 8,097,983 – 8,098,092
Length 109
Max. P 0.922738
window4960

overview

Window 0

Location 8,097,983 – 8,098,092
Length 109
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 80.19
Mean single sequence MFE -32.05
Consensus MFE -18.98
Energy contribution -18.85
Covariance contribution -0.13
Combinations/Pair 1.11
Mean z-score -2.40
Structure conservation index 0.59
SVM decision value 1.15
SVM RNA-class probability 0.922738
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8097983 109 + 22224390
CCCAAAUCGCGCAUUUCCAGCAUACGGAGUGCAUCACUUGGCGAUAUAUUCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGCAAAAGCGGCAAAAGCGG-
.........(((.((((((((((.(.(((((...))))).).......(((....)))......))))(((....)))...))))))((.((....)).))....))).- ( -33.60)
>DroSec_CAF1 3845 95 + 1
-CCAAAUCGCAAA--UCCCGCAUACGGAGUGCAUCACUUGGCGAU--AUCCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGG---------AAAAGCGG-
-......(((...--((((((...((((.(((........)))..--.))))............((((((....)))))).......)))))---------)...))).- ( -33.80)
>DroSim_CAF1 8446 96 + 1
ACCAAAUCGCAAA--UCCCGCAUACGGAGUGCAUCACUUGGCGAU--AUCCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGG---------AAAAGCGG-
.......(((...--((((((...((((.(((........)))..--.))))............((((((....)))))).......)))))---------)...))).- ( -33.80)
>DroEre_CAF1 3756 85 + 1
-----AGCUCGCAUAUCC-----GUGGAGUGCAUCACCUGGCGAU--AUCCGAAA----GAAAGGUGCGCGCAUGCGCAUGUGGAAAGCGGG---------AAAAGCGGG
-----..(((((...(((-----(((((.(((........)))..--.)))....----...(.((((((....)))))).).....)))))---------....))))) ( -27.00)
>consensus
_CCAAAUCGCAAA__UCCCGCAUACGGAGUGCAUCACUUGGCGAU__AUCCGAAAGAAAGAAAGGUGCGCGCAUGCGCAUAUGGAAAGCGGG_________AAAAGCGG_
.......(((.....(((......((((.(((........))).....))))............((((((....))))))..)))..))).................... (-18.98 = -18.85 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:19 2006