Locus 3025

Sequence ID X_DroMel_CAF1
Location 8,090,692 – 8,090,792
Length 100
Max. P 0.936517
window4953

overview

Window 3

Location 8,090,692 – 8,090,792
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 92.57
Mean single sequence MFE -37.50
Consensus MFE -31.99
Energy contribution -31.92
Covariance contribution -0.06
Combinations/Pair 1.10
Mean z-score -2.22
Structure conservation index 0.85
SVM decision value 1.25
SVM RNA-class probability 0.936517
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8090692 100 - 22224390
GUCGAGCUCCUUGGCUUCAGUUGCCAGGUAGCGAUAGUGCUGCCGAAUGCCACACAUGCCACUGGGUCAGUGGGAGUUCGAAUCAAAGUGGAGCAAUCAU
.(((((((((((((((.((((.((..(((((((....)))))))..(((.....))))).)))))))))..)))))))))).........((....)).. ( -38.30)
>DroSec_CAF1 4588 98 - 1
GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGGGCUGCCGAAUGGC--ACAUGCCACUGGGUCAGUGGGAGUUCGAAUCAAAGUGGAGCAAUCAU
.(((((((((((((((.(((......((((((......))))))...((((--....))))))))))))..)))))))))).........((....)).. ( -40.80)
>DroEre_CAF1 4056 96 - 1
GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGUGCUGCCGAAUGCC--ACAUGCCGCUGGGUCGG--AGAGCUCGAAUCAAAGUGGAGCAAUCAU
.((((((((..(((((.(((..((..(((((((....)))))))..(((..--.)))))..)))))))).--.)))))))).........((....)).. ( -34.60)
>DroYak_CAF1 4040 96 - 1
GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGUGGUGCCAAAUGCC--ACAUGCCACUGGGUCAG--GGAGUUCGAAUCAAAGUGGGGCAAUCAU
.(((((((((((((((.(((.(((......)))...(((((.......)))--))......)))))))))--)))))))))......((((.....)))) ( -36.30)
>consensus
GUCGAGCUCCUUGGCUUCAGAUGCCAGGUAGCGAUAGUGCUGCCGAAUGCC__ACAUGCCACUGGGUCAG__GGAGUUCGAAUCAAAGUGGAGCAAUCAU
.(((((((((((((((.(((..((..((((((......))))))..(((.....)))))..)))))))))..))))))))).........((....)).. (-31.99 = -31.92 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006