Locus 302

Sequence ID X_DroMel_CAF1
Location 978,418 – 978,518
Length 100
Max. P 0.999886
window457

overview

Window 7

Location 978,418 – 978,518
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 96.28
Mean single sequence MFE -27.12
Consensus MFE -25.66
Energy contribution -25.90
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -2.61
Structure conservation index 0.95
SVM decision value 4.38
SVM RNA-class probability 0.999886
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 978418 100 - 22224390
UUUCAGUCGGUUUAUUUUGGUGCCAUGAU---AUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC
....((((.((((..(((((((((((...---)))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. ( -26.70)
>DroSec_CAF1 61318 103 - 1
UUUCAGUCGGUUUAUUUUGGUGCCAUGAUAUUAUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGGUAAUGAGUUCAAUUGCACGAAAUGGACUAC
....((((.((((..((((((((((((....))))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. ( -28.60)
>DroSim_CAF1 40465 103 - 1
UUUCAGUCGGUUUAUUUUGGUGCCAUGAUAUUAUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC
....((((.((((..((((((((((((....))))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. ( -28.60)
>DroEre_CAF1 74612 100 - 1
UUUCAGUCGGUUUAUUUUGGUGCCAUGAU---AUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGAGCUAC
........((((((((((((((((((...---)))))))).............((((((((..(((.........)))..))))))))...)))))))))).. ( -25.20)
>DroYak_CAF1 66776 100 - 1
UUUCAGUCGGUUUAUUUUGGUGCCAUGAU---AUGGUAUCGAAUGCUAUAUAACAAUUCGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC
........(((((((((((.((((((..(---((((.(((((((...........))))))))))))..)))....((....))...)))))))))))))).. ( -26.50)
>consensus
UUUCAGUCGGUUUAUUUUGGUGCCAUGAU___AUGGUAUCGAAUGCUUUAUAACAAUUGGAUCCAUAAGAUGAUAAUGAGUUCAAUUGCACGAAAUGGACUAC
....((((.((((..(((((((((((......)))))))))))..........((((((((..(((.........)))..))))))))....)))).)))).. (-25.66 = -25.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:11 2006