Locus 3018

Sequence ID X_DroMel_CAF1
Location 8,063,734 – 8,063,831
Length 97
Max. P 0.939383
window4941

overview

Window 1

Location 8,063,734 – 8,063,831
Length 97
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -25.61
Consensus MFE -12.92
Energy contribution -15.24
Covariance contribution 2.32
Combinations/Pair 1.10
Mean z-score -2.36
Structure conservation index 0.50
SVM decision value 1.30
SVM RNA-class probability 0.939383
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8063734 97 + 22224390
CCAACCAUACACCCCA--C-------CCCCCUCAAGUGCAUGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGG--GGA
...........((((.--.-------...(((....((....))...)))...((((((((......((((..(((.....))))))).....))))))))))--)). ( -33.90)
>DroSec_CAF1 45676 101 + 1
CCACCCAUACCCCACAUGC-------CCCCCUCAAGUGCACGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGGAUGGC
....((((.(((.....((-------...(((....((....))...)))..))(((((((......((((..(((.....))))))).....)))))))))))))). ( -31.80)
>DroSim_CAF1 21398 103 + 1
CCACCCAAACCCCACACACCC-----CCCCCUCAAGUGCACGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGGUUGGU
....((((.(((.........-----...(((....((....))...)))....(((((((......((((..(((.....))))))).....)))))))))))))). ( -30.70)
>DroEre_CAF1 33592 81 + 1
CCUCCCACAC---------C-------CCCUUCAAGUGCACGCAAUCAGGACUCUCUCACCUCUUUCGCCACUUGGAAUUUUCAUGGCUUCUCGAGG-----------
(((((((...---------.-------...((((((((..((.((..(((.........)))..)))).)))))))).......)))......))))----------- ( -14.84)
>DroYak_CAF1 39700 97 + 1
CCGCCCACACCUCUCACACCCCCUUUCCCCGUCAAGUGCACGCAAUCAGGACUCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUCGAGG-----------
.........((((.................(((...((....)).....)))...............((((..(((.....))))))).....))))----------- ( -16.80)
>consensus
CCACCCACACCCCACA__CC______CCCCCUCAAGUGCACGCAAUCAGGACGCUCUCACCUCUUUCGCCACUUGGAAUUUCCAUGGCUUCUUGGUGAGAGGG__GG_
.............................(((....((....))...)))...((((((((......((((..(((.....))))))).....))))))))....... (-12.92 = -15.24 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:02 2006