| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,061,072 – 8,061,163 |
| Length | 91 |
| Max. P | 0.946465 |
| Location | 8,061,072 – 8,061,163 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.76 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -16.46 |
| Energy contribution | -17.52 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8061072 91 - 22224390 GUGU------GUGUGCUUGG--CUGAGAGG-GGAGCAAACAAUAGCAA-AAU-----AUUCAAGUGUGCAAACAGGCGAAGGAGGCACACAGGAAUAGAAAUAGCA ((.(------((.(((((..--((....))-.))))).)))...))..-..(-----((((..((((((...(.......)...))))))..)))))......... ( -24.40) >DroEre_CAF1 30962 94 - 1 GAGUGU--GUGCGUGCUUAG--CUGAGAGG-GGAGCAAACAAUAGCAA-AGU-----GUUCAAGUGUGCAAGCA-GCGAAGGAGGCACACAGGAAUAGAUAUAGCA ..((.(--((...(((((..--((....))-.))))).)))...))..-..(-----((((..((((((.....-.(....)..))))))..)))))......... ( -26.30) >DroYak_CAF1 36916 98 - 1 GUGUGUGUGUGUGUGCUUAG--CUGAGAGG-GCAGCAAACAAUAGCAAAAAU-----AUUCAAGUGUGCAAACAGGCGAAGGAGGCACGCAGGAAUAGAAAUAGCA ((.(((...(((.((((..(--((.....)-)))))).)))...)))....(-----((((..((((((...(.......)...))))))..)))))......)). ( -24.50) >DroAna_CAF1 43092 103 - 1 GUGCAU--GUGUGUGCAUGUCUCUGAGAGGGGGAGCCAACAAUGGCAA-AAUCCAAAACUCAAGUGUGCAAACAGGCGAAAGAGGCGCUCAGGAAUAGGAAUAGGA ((((((--....))))))((..(((((((..(((((((....))))..-..)))....)))....((((.......(....)..))))))))..)).......... ( -27.10) >consensus GUGUGU__GUGUGUGCUUAG__CUGAGAGG_GGAGCAAACAAUAGCAA_AAU_____AUUCAAGUGUGCAAACAGGCGAAGGAGGCACACAGGAAUAGAAAUAGCA ..((.....(((.(((((....((....))..))))).)))...))...........((((..((((((.......(....)..))))))..)))).......... (-16.46 = -17.52 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:01 2006