| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,045,772 – 8,045,868 |
| Length | 96 |
| Max. P | 0.792328 |
| Location | 8,045,772 – 8,045,868 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.28 |
| Mean single sequence MFE | -14.42 |
| Consensus MFE | -12.55 |
| Energy contribution | -13.55 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8045772 96 - 22224390 UGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAGCAGGAAAAUAAUAACAAGGAAAAUAGCAAAAAGAUAUAGAAA--AAAUAAUGAAAAA (((((((((((....(((((.....)).))).)))))))))))........................................--............. ( -16.90) >DroSec_CAF1 19249 94 - 1 UGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAGCAGCAAAAUAAUAACAAGGAAAAUAGCAAAAAGAUACAAAAA--AAAUAAUGAAA-- (((((((((((....(((((.....)).))).)))))))))))........................................--...........-- ( -16.90) >DroEre_CAF1 16136 94 - 1 UGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAACAACAAAAUAAUAACGAGGGAAAUAACAAAUAAAUACAGAAA--AAAUACAGAAA-- ((.((((((((....(((((.....)).))).)))))))).))........................................--...........-- ( -10.30) >DroYak_CAF1 21544 96 - 1 UGCUUACUUUUGGCCCUGGCCUUUAGCACAGACAGAGUGCACAGCAAAAUAAUAACAAGGAAAAUAACAAAAAGAUACAGAAACAAAAUAAUGAAA-- ((((.......(((....)))....((((.......))))..))))..................................................-- ( -13.60) >consensus UGCUUACUUUUGGCCCUGGCCUUUAGCACAGAAAGAGUGAACAGCAAAAUAAUAACAAGGAAAAUAACAAAAAGAUACAGAAA__AAAUAAUGAAA__ (((((((((((....(((((.....)).))).)))))))))))....................................................... (-12.55 = -13.55 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:55 2006