Locus 3011

Sequence ID X_DroMel_CAF1
Location 8,040,200 – 8,040,305
Length 105
Max. P 0.819989
window4932

overview

Window 2

Location 8,040,200 – 8,040,305
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 86.51
Mean single sequence MFE -16.12
Consensus MFE -12.58
Energy contribution -13.39
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -1.86
Structure conservation index 0.78
SVM decision value 0.68
SVM RNA-class probability 0.819989
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8040200 105 + 22224390
UACAUAAAGGGGCCAAAAAAAAAAAAGAAAAAAUACACAUUUUAUGGGACCCACAUACCAAAAGGAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACCAAGACA
........((..(((.((((...................)))).)))...((((...((....)).((((.....)))).........)))).....))...... ( -14.21)
>DroSec_CAF1 13779 102 + 1
UACAUAAAGUGG---AAAAAAAAGAAGAAAAUAAACACAUUUUAUGGGGCCCACAUACCAAAAGUAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUCCCAAGACA
..(((((((((.---......................)))))))))(((.((((.(((.....)))((((.....)))).........))))....)))...... ( -20.30)
>DroSim_CAF1 3068 105 + 1
UACAUAAAGUGGCAAAAAAAAAAGAAGAAAAUAAACACAUUUUAUGGGACCCACAUACCAAAAGUAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACCAAGACA
..(((((((((..........................)))))))))....((((.(((.....)))((((.....)))).........))))............. ( -16.57)
>DroYak_CAF1 15792 92 + 1
UACAUAAAGUAGCGAAAAAA-------------UACACACUUUAUGGGACCCACAUACCAAAAGCAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACUUAGACA
..((((((((.(.(......-------------..).)))))))))....................((((.....)))).....(((((((....)))))))... ( -13.40)
>consensus
UACAUAAAGUGGC_AAAAAAAAAGAAGAAAAUAAACACAUUUUAUGGGACCCACAUACCAAAAGUAGCAUUCAUUAUGCACUCAUUAAGUGGAAUUACCAAGACA
..(((((((((..........................)))))))))....((((.(((.....)))((((.....)))).........))))............. (-12.58 = -13.39 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:54 2006