| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,015,386 – 8,015,494 |
| Length | 108 |
| Max. P | 0.567882 |
| Location | 8,015,386 – 8,015,494 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 86.88 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -15.88 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8015386 108 + 22224390 CUCUCUCUCUCUCUCUCUGUCCAAAAUUGUGGAUUGUGCUCAUGCACAGAGAAAAUCCAUUCUUCAUUCAGUCAUUUUCACGUUAAAUUGACAUUAAAAGAUAGCUUC ......((.(((.((((((((((......))))).((((....)))))))))..................((((.(((......))).))))......))).)).... ( -19.50) >DroSec_CAF1 5723 104 + 1 CUCUCUC----UCUGUCUGUCCAAAACUGAGGAUUGUGCUCAUGCACAGAGAAAAUCCAUUCUCCAUCCAGUCGUUUUCACAUUAAAUUGACAUUGAAAGAUAGCUUA .......----.((((((...(((......(((((((((....)))))(((((......))))).)))).((((.(((......))).)))).)))..)))))).... ( -23.60) >DroSim_CAF1 5411 104 + 1 CUCUCUC----UCUGUCUAUCCAAAUUGGAGGAUUGUGCUCAUGGACAGAGAAAAUCCAUUCUCCAUUCAGACAUUUUCACAUUAAGUUGACAUUAUUAGAUAGCUUA .......----.((((((((((.....))).((..(((.((.((((..(((((......)))))..)))))))))..))..................))))))).... ( -20.80) >consensus CUCUCUC____UCUGUCUGUCCAAAAUUGAGGAUUGUGCUCAUGCACAGAGAAAAUCCAUUCUCCAUUCAGUCAUUUUCACAUUAAAUUGACAUUAAAAGAUAGCUUA ............((((((((((........))))(((((....)))))(((((......)))))......((((.(((......))).))))......)))))).... (-15.88 = -16.00 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:51 2006