Locus 3004

Sequence ID X_DroMel_CAF1
Location 8,007,162 – 8,007,271
Length 109
Max. P 0.515961
window4923

overview

Window 3

Location 8,007,162 – 8,007,271
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 80.55
Mean single sequence MFE -48.40
Consensus MFE -33.73
Energy contribution -35.07
Covariance contribution 1.34
Combinations/Pair 1.31
Mean z-score -1.18
Structure conservation index 0.70
SVM decision value -0.03
SVM RNA-class probability 0.515961
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8007162 109 - 22224390
CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGUAUCCGGCCUCGGAUGGCCUAAUUGGCGGU
((((...(((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).))))))))).)))).((.(((.....))).)) ( -48.70)
>DroSec_CAF1 6034 109 - 1
CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGCAUCCGGUCUCGGAUGGCCUAAUUGGCGGU
((((..((((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).)))))))))))))).((.(((.....))).)) ( -52.30)
>DroSim_CAF1 5722 109 - 1
CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGCAUCCGGCCUCGGAUGGCCUAAUUGGCGGU
((((...(((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).))))))))).)))).((.(((.....))).)) ( -50.70)
>DroEre_CAF1 6037 109 - 1
CGAGCAUCUGGAUGCUUUGGGUCUGCCCCUGCCCGGCGCGCCGCUGGACGAUAAUUACUUCGAUGAGCUGGAGCGCGAGUAUCCGGAAGCGGAUGGCCCAAUGGGCGGU
...((.((((((((((((((((........)))))((((.(((((.(.(((........))).).))).)).))))))))))))))).))..((.((((...)))).)) ( -49.10)
>DroYak_CAF1 6116 109 - 1
CGAGCAUCUGGAUGCUGCGGGUCAGCCACUGCCCGGUGCUCCGCUGGACGACGGGUACUUCGAUGAGCUGGAACGCGAGCAUCUGGACGCGGAUGGCCCACUGGGCGCU
...((.((..(((((((((..((((((((((((((.((.(((...))))).))))))....).)).)))))..))).))))))..)).)).....((((...))))... ( -49.30)
>DroAna_CAF1 6817 109 - 1
GGAUCAGAUCGAUGAAGACGGGGACCCGCUGCCGGGGGCACCGCUUGGUGAUGACUACUUCGACGACCUGGAACGGGACUAUCCGCCGGCGGAGGCCCUGCAGCCUGGA
...((((............((....))(((((.((((.(.(((((.((((.(((.....)))....((((...))))......))))))))).).))))))))))))). ( -40.30)
>consensus
CGAGCAACUGGAUGCUGUGGGUCUACCCCUGCCCGGUGCUCCGCUGAGCGAUGAGUACUUCGAUGAGCUGGAGCGCGAGCAUCCGGCCGCGGAUGGCCUAAUGGGCGGU
......((((((((((.(((((........)))))((((((((((.(.(((........))).).))).))))))).))))))))))........(((.....)))... (-33.73 = -35.07 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:46 2006