Locus 3003

Sequence ID X_DroMel_CAF1
Location 8,002,725 – 8,002,826
Length 101
Max. P 0.567108
window4922

overview

Window 2

Location 8,002,725 – 8,002,826
Length 101
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 77.66
Mean single sequence MFE -23.71
Consensus MFE -14.18
Energy contribution -14.46
Covariance contribution 0.28
Combinations/Pair 1.33
Mean z-score -1.66
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.567108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 8002725 101 - 22224390
UGUUCACACUGGCCUGCAUCUGCGCAGGCCAUGUUGUUUACACGCUAUCAGCUUCUAACAA----CCAAUUAAACUAUACAAGUGAUGGUUUUACAUUGA--UUUGG
.........((((((((......)))))))).((((((.....((.....))....)))))----).............(((((((((......)))).)--)))). ( -27.20)
>DroSec_CAF1 1656 101 - 1
UGUUCACACUGGCCUGCAUCUGCGCAGGCUAUGUUGUAUACGCGCUAUCAGCUUCCAACAA----CCAAAUAAACUAUACAAGUAAUGGUUUUGCAUUUA--AUUAC
.((..((((((((((((......)))))))).).)))..))((((.....)).........----......(((((((.......))))))).)).....--..... ( -22.60)
>DroSim_CAF1 1187 103 - 1
UGUUCACACUGGCCUGCAUCUGCGCAGGCUAUGUUGUAUACACGCUAGCAGCUUCUAACUA----CCAAAUAAACUAUACAAGUAAUGGUUUUACAUUGAUUAUCUG
(((..((((((((((((......)))))))).).)))..))).((.....)).........----.(((..(((((((.......)))))))....)))........ ( -21.40)
>DroEre_CAF1 1681 101 - 1
UGUUCACACUGGCCUGCAUUUCGGCAGGCGGUGUUGCACACGCGCUAUCAGCUGCUUAUAA----GCAAAUAAACUUUUAAAGUGAUCAUUUUACAUUAA--UUUAU
(((..((((((.(((((......))))))))))).)))(((((.......))((((....)----)))..............)))...............--..... ( -25.00)
>DroYak_CAF1 1682 102 - 1
UGUUCGCACUGGCCUGCAUUUCGGCCGGCGCUGUUAUACACACGCUA---ACUGCUUUCAACACCCCAAAUCAACUGUUAAAGUGAUGAUUUUUCAUAAA--UGUAU
.....((.((((((........)))))).))....((((((((..((---((........................))))..)))((((....))))...--))))) ( -22.36)
>consensus
UGUUCACACUGGCCUGCAUCUGCGCAGGCGAUGUUGUAUACACGCUAUCAGCUUCUAACAA____CCAAAUAAACUAUACAAGUGAUGGUUUUACAUUAA__UUUAG
.....(((.((((((((......)))))))))))................................................((((.....))))............ (-14.18 = -14.46 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:45 2006