| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 8,000,838 – 8,000,940 |
| Length | 102 |
| Max. P | 0.569292 |
| Location | 8,000,838 – 8,000,940 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 73.44 |
| Mean single sequence MFE | -20.13 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.20 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 8000838 102 - 22224390 GGUAUUAGAAAUACAUAAGUACGCAUGGUAGCAAUCAUAAUUGUCAUCUUUUUGAAGCGAAUUCAUUCCUCUAGCAGUG-UGAAUUCGUUCCCUAGAUAGACA (.(((((....(((....)))....))))).).........((((((((....(.(((((((((((.(........).)-)))))))))).)..)))).)))) ( -20.90) >DroEre_CAF1 6682 99 - 1 GGUAUUGGACAUACA----UACACAUGGUAGCAAUUAUAAUGUUCAUCUUUUUGAAGUGAAUUCAUUACGUUAUCUGUGCUGAAUUCGGUCAAUAGAUAGAGG ......((((((...----(((.....))).........))))))((((..((((..((((((((.((((.....)))).)))))))).)))).))))..... ( -18.50) >DroYak_CAF1 6384 82 - 1 ---------------------CGCAUGGUAGCAAUCAUAAUUUUCAUCUUUUUGAAGUGAAUUCAUUGCCUUAUCAGUGGUGAAUUCGGUCAAUAGAUAGAAU ---------------------.((......))..........(((((((..((((..(((((((((..(.......)..))))))))).)))).)))).))). ( -21.00) >consensus GGUAUU_GA_AUACA____UACGCAUGGUAGCAAUCAUAAUUUUCAUCUUUUUGAAGUGAAUUCAUUACCUUAUCAGUG_UGAAUUCGGUCAAUAGAUAGAAA ........................(((((....)))))....(((((((...(((..((((((((..(((.....)))..)))))))).)))..)))).))). (-14.52 = -14.20 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:43 2006