Locus 30

Sequence ID X_DroMel_CAF1
Location 125,921 – 126,041
Length 120
Max. P 0.635349
window36

overview

Window 6

Location 125,921 – 126,041
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.50
Mean single sequence MFE -36.74
Consensus MFE -26.36
Energy contribution -28.64
Covariance contribution 2.28
Combinations/Pair 1.03
Mean z-score -1.92
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.635349
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 125921 120 - 22224390
AUUAAUUCCGGCAACGUAAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGGAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCAUGUUUUCUGGGCAUCGU
......((((((..(((...(((....)))))).....(((......)))))))))(((((.((((((((((...((((.........))))....))))))...)))).)))))..... ( -34.90)
>DroSec_CAF1 14060 120 - 1
AUUAAUUCCGGCAACGUGAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGUAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCGUGUUUUCUGGGCCUCGU
.....(((((....)).)))((((((((((((.....((((((.(((.....)))...))))))..((((((...((((.........))))....)))))))))))))).))))..... ( -39.50)
>DroSim_CAF1 19588 120 - 1
AUUAAUUCCGGCAACGUGAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGUAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCGUGUUUUCUGGGCCUCGU
.....(((((....)).)))((((((((((((.....((((((.(((.....)))...))))))..((((((...((((.........))))....)))))))))))))).))))..... ( -39.50)
>DroEre_CAF1 20667 104 - 1
AUUAAUUCCGGCAACGUGAAGUCUGAAGACACGAUUAUUAUGGAACAAUAGCUGGAUCCCAUAGAAGGCAUAAUCUCGCCUGGAUUGAGCGAUUGACGUGCCAU----------------
.........((((.(((...(((....)))...............((((.(((.(((((......((((........))))))))).))).)))))))))))..---------------- ( -30.80)
>DroYak_CAF1 17012 120 - 1
AUUAAUUCCGGCAACGUGAAGUCUGAAGACACGAUUAUUAUGGAACAAUAGCUGGAGCCCAUAGAAGGCAUGAUCUCGCCUGAGUUGAGCGAUUGACGUGCCGUAUUCUCUGGGCCUCGA
......((((((..(((...(((....)))))).....(((......)))))))))(((((.((((((((((.(((((((......).))))..))))))))...)))).)))))..... ( -39.00)
>consensus
AUUAAUUCCGGCAACGUGAAGUCCGAAGACACGAUUAUUAUGGAACAAUAGCUGGAGCCCAUAGAAGGCAUGAUUUCGCCUGGAUUAAGCGAUUGACGUGCCGUGUUUUCUGGGCCUCGU
......((((((..(((...(((....)))))).....(((......)))))))))(((((.((((((((((...((((.........))))....))))))...)))).)))))..... (-26.36 = -28.64 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:49 2006