Locus 3

Sequence ID X_DroMel_CAF1
Location 19,813 – 19,933
Length 120
Max. P 0.719082
window3

overview

Window 3

Location 19,813 – 19,933
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -25.26
Consensus MFE -25.01
Energy contribution -24.79
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.99
SVM decision value 0.39
SVM RNA-class probability 0.719082
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19813 120 - 22224390
AUUCUACGUGUAUGCGCGUAGUUAUAUAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCAACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCGUUUUCCAUUUUUAAGUUCG
...(((((((....))))))).......((((((...(((((((...............)))))))....((((((.......))))))(((.....))).............)))))). ( -25.66)
>DroSec_CAF1 7066 120 - 1
AUUCUACGUGUAUGCGCGUAGUUAUAAAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCGACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCAUUUUCCAUUUUUAAUUUCG
...(((((((....))))))).......(((...((((((((((...............)))))))....((((((.......)))))).........)))..))).............. ( -25.06)
>DroSim_CAF1 7154 120 - 1
AUUCUACGUGUAUGCGCGUAGUUAUAAAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCGACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCAUUUUCCAUUUUUAAUUUCG
...(((((((....))))))).......(((...((((((((((...............)))))))....((((((.......)))))).........)))..))).............. ( -25.06)
>consensus
AUUCUACGUGUAUGCGCGUAGUUAUAAAGAAUUUUGCGAUAAGUAUUUUAUUGAUUUCGACUUGUCAUAAUACAGCUAAAAUUGUUGUAGCUUAUGUAGCAUUUUCCAUUUUUAAUUUCG
...(((((((....))))))).......(((...((((((((((...............)))))))....((((((.......)))))).........)))..))).............. (-25.01 = -24.79 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:55 2006