| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,984,449 – 7,984,558 |
| Length | 109 |
| Max. P | 0.553788 |
| Location | 7,984,449 – 7,984,558 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.61 |
| Mean single sequence MFE | -43.88 |
| Consensus MFE | -26.00 |
| Energy contribution | -26.12 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7984449 109 - 22224390 CCUGCUGGAUCGAACUCCAUCUGAACGGGCCGCUCCAGUGGCUGGAUCGCGUGCUCACACAGAUGGGUUCGCCACGGCUGCCGUGCAGCUCCAUGUCAUAAGCGCACGG----------- ...((((...(((((.(((((((...((((((((((((...)))))..))).))))...))))))))))))...))))..((((((.(((..........)))))))))----------- ( -50.30) >DroPse_CAF1 6376 120 - 1 CCUGCUGGAUUGAGCUGCAUCUGAAUGGCCCACUCCAGUGGCUGGAUCGCGUUCUUACUCAAAUGGGAUCGCCGCGACUGCCCUGCAGCUCCAUGUCGUAGGCAGCCACCAAAUAACACA .(((((.(((.((((((((.......(((((((....))))...((((.((((........)))).)))))))((....))..))))))))...)))...)))))............... ( -39.30) >DroEre_CAF1 6706 109 - 1 CCUGUUGGAUCGAACUCCAUCUGAACGGGCCGCUCCAGUGGCUGGACCGCGUGCUCACGCAGAUGGGUUCGCCUCGGCUGCCGUGCAGCUCCAUGUCAUAAGCGCACGG----------- ...(((((..(((((.(((((((...((((((((((((...)))))..))).))))...))))))))))))..)))))..((((((.(((..........)))))))))----------- ( -49.50) >DroWil_CAF1 8757 106 - 1 CAUGCUGGAUUGAAUUGCAUUUGAAUGGUCCGCUGCAGUGGCUAGAUCGAGUCCUAACCCAAAUGGGUUCACCGCGUCUGCCAUGCAGUUCCAUGUCGUAAAUGGA-------------- .................((((((.((((...((((((.((((.((((((.((...(((((....))))).)))).)))))))))))))).))))....))))))..-------------- ( -34.90) >DroAna_CAF1 5839 109 - 1 CCUGCUGGAUCGAGCUGCACCUGAACGGGCCGCUCCAGUGGCUGGAUCGCGUCCUCACCCAGAUGGGAUCGCCGCGGCUGCCGUGCAGCUCCAUGUCCUAAAGGGGUGG----------- (((...((((.((((((((((.....)(((.(((...(((((..((((.((((........)))).)))))))))))).))))))))))))...))))...))).....----------- ( -49.00) >DroPer_CAF1 6602 119 - 1 CCUGCUGGAUUGAGCUGCAUCUGAAUGGCCCACUCCAGUGGCUGGAUCGCGUUCUCACCCAAAUGGGAUCGCCGCGACUGCCCUGCAGCUCCAUGUCGUAGGCAGCCACCAAAUAACAC- .(((((.(((.((((((((.......((((.((....))))))((.(((((......(((....))).....)))))...)).))))))))...)))...)))))..............- ( -40.30) >consensus CCUGCUGGAUCGAACUGCAUCUGAACGGGCCGCUCCAGUGGCUGGAUCGCGUCCUCACCCAAAUGGGAUCGCCGCGGCUGCCGUGCAGCUCCAUGUCGUAAGCGGACGG___________ ..((((.(((.(((((((((.....(((.((((....)))))))....(((.(((((......))))).)))..........)))))))))...)))...))))................ (-26.00 = -26.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:39 2006