Locus 2995

Sequence ID X_DroMel_CAF1
Location 7,978,479 – 7,978,599
Length 120
Max. P 0.701161
window4912

overview

Window 2

Location 7,978,479 – 7,978,599
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -44.25
Consensus MFE -25.55
Energy contribution -25.42
Covariance contribution -0.13
Combinations/Pair 1.44
Mean z-score -1.67
Structure conservation index 0.58
SVM decision value 0.35
SVM RNA-class probability 0.701161
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7978479 120 + 22224390
CUGCGGCAAACCAUCGAGGAGGAGCGUCAAAUCUUCGCCGAUAAUGCGGUGGAGAAGUGGCGCACCUUCUUCGAUGCGAUGAAUGCCAACUUUGACGAGAAGGCCAAUUUGGUAAGGGCA
..((((((..((((((((((((.((((((..(((((((((......)))))))))..)))))).)).))))))))).).....))))..((((.....))))(((.....)))....)). ( -51.50)
>DroPse_CAF1 496 120 + 1
CUUCGUCACACUAUCGAGGAGGAGCGUCAGCUGUUUGCCGUCAGUGCCGUGGAGAAAUGGCGUACCUUCUUCGAUGCCCUCAACAAGAACUUUGAUGAGAAGGCCAAUCUGGUGCGGUCC
..(((.(((...((((((((((.((((((..(.((..(.((....)).)..)).)..)))))).)).))))))))(((((((.((((...)))).))))..))).......))))))... ( -38.80)
>DroGri_CAF1 775 120 + 1
CUGCGAAAUACGGUCGAGGAUGAGCGUCAGACGUUCUCAUUGACCGCGGAGGAGAAGUGGCGCAGCUUCUUCAAUGCCCUCAAGACGAACUUCGACGAGAAGUCGAAUUUGGUGCGUGUC
..((((.....((((((.((.(((((.....))))))).))))))(((..((((((((......))))))))..)))..))...((.((.((((((.....)))))).)).))))..... ( -42.00)
>DroWil_CAF1 2488 120 + 1
CUUCGCCAUACCAUCGAAGAUGAACGUCAAUUGUUCUCCAUAACAGCUGUGGAGAAAUGGCGAACCUUUUUCGAUGCUCUCAAUGCGAAUUUCGAGGAGAAGGCCGAAUUGGUCCGGAGU
(((((......(((((((((....(((((....(((((((((.....))))))))).))))).....))))))))).((((....((.....))..)))).((((.....))))))))). ( -39.20)
>DroAna_CAF1 292 120 + 1
CUGCGGCACACCAUCGAGGAGGAGCGCCAGAUCUUCGCCGUGAGCGCCGUGGAGAAGUGGCGCACCUUCUUCGAUGCGAUGAACGCCAACUUCGACGAGAAGGCCAGCCUGGUGAGGGCG
....(((.((((((((((((((.((((((..(((((((.((....)).)))))))..)))))).)).))))))))).).))........((((.....))))))).((((.....)))). ( -55.20)
>DroPer_CAF1 736 120 + 1
CUUCGUCACACUAUCGAGGAGGAGCGUCAGCUGUUUGCCGUCAGUGCCGUGGAGAAAUGGCGUACCUUCUUCGAUGCCCUCAACAAGAACUUUGAUGAGAAGGCCAAUCUGGUGCGGUCC
..(((.(((...((((((((((.((((((..(.((..(.((....)).)..)).)..)))))).)).))))))))(((((((.((((...)))).))))..))).......))))))... ( -38.80)
>consensus
CUGCGGCACACCAUCGAGGAGGAGCGUCAGAUGUUCGCCGUCAGUGCCGUGGAGAAAUGGCGCACCUUCUUCGAUGCCCUCAACACGAACUUCGACGAGAAGGCCAAUCUGGUGCGGGCC
........((((((((((((((.((((((....(((.(((((.....))))).))).))))))..))))))))))..............((((.....))))........))))...... (-25.55 = -25.42 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006