Locus 2994

Sequence ID X_DroMel_CAF1
Location 7,969,387 – 7,969,503
Length 116
Max. P 0.835559
window4911

overview

Window 1

Location 7,969,387 – 7,969,503
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -27.73
Consensus MFE -24.53
Energy contribution -25.53
Covariance contribution 1.00
Combinations/Pair 1.06
Mean z-score -2.22
Structure conservation index 0.88
SVM decision value 0.73
SVM RNA-class probability 0.835559
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7969387 116 - 22224390
UAAAUUGAAACUGUGGUACGCCAUCUAAGCCAAUCAACGUGCCUUGGAUGCAAUACUACGAUUCGCACAUACCCUCUUUGGAUAUAUGUACUAUAAUCAACUUAUAUCAAUCUUGA
...(((((....((((((...((((((((.((.......)).))))))))...))))))((((.(.(((((.((.....))...))))).)...))))........)))))..... ( -22.90)
>DroSec_CAF1 6939 115 - 1
UAAAUUGAAUCUGUGGUACGCCAUCUAAGCCAAUCAACGUGUCUUGGGUGGAAUACUUCGAUUCGCACAUACCCUUUUGGGAUAUGGGUACCAUAAUCAACUUAUAUCAAUCUUG-
(((.((((...((((((((((((((((((.((.......)).))))))))((((......)))))).(((((((....))).)))).)))))))).)))).)))...........- ( -32.20)
>DroSim_CAF1 4898 115 - 1
UAAAUUGAAACUGUGGUACGCCAUCUAAGCCAAUUAACGUGUCUUGGUUGGAAUACUUCGAUUCUCACAUACCCUCUUGGGAUAUGGGUACCAUAAUCAACUUAUAUCAAUCUUG-
(((.((((...((((((((.(((.(((((.((.......)).))))).)))................(((((((....))).)))).)))))))).)))).)))...........- ( -28.10)
>consensus
UAAAUUGAAACUGUGGUACGCCAUCUAAGCCAAUCAACGUGUCUUGGAUGGAAUACUUCGAUUCGCACAUACCCUCUUGGGAUAUGGGUACCAUAAUCAACUUAUAUCAAUCUUG_
(((.((((...((((((((.(((((((((.((.......)).)))))))))................(((((((....))).)))).)))))))).)))).)))............ (-24.53 = -25.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:34 2006