Locus 2992

Sequence ID X_DroMel_CAF1
Location 7,964,178 – 7,964,298
Length 120
Max. P 0.562985
window4908

overview

Window 8

Location 7,964,178 – 7,964,298
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 84.78
Mean single sequence MFE -36.55
Consensus MFE -24.79
Energy contribution -25.10
Covariance contribution 0.31
Combinations/Pair 1.20
Mean z-score -1.57
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.562985
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7964178 120 + 22224390
AGGGAAAACUGGAGCGUUCAGUUAAGCAGCUGGAGGAGCGGGUGGAGAGCAAAGGAAUUGCCGAUUACCUAAAGGCUGUACUCGGCUACAACUAGUGAUUGCGGACGGGAAUCCGCAAUA
.......(((((.((.(((((((....)))))))...))((((((.(.((((.....)))))..))))))...(((((....)))))....))))).((((((((......)))))))). ( -37.00)
>DroSim_CAF1 14299 114 + 1
AGGGCAAACUGGAGCGUUCAGUUAAGCAGCUGGAGGAGCAGGUGGAGAGCAAAGGAAUUGCCGAUUACCUAAAGGCUGUACUCGGCUACGACUAGUGG------AGUCCCGUCCGCAAUA
.((((.(((((((...)))))))..((((((..(((((..((..(....(....)..)..))..)).)))...))))))((((.((((....)))).)------)))...))))...... ( -34.00)
>DroEre_CAF1 15216 111 + 1
AGGGGAAGCUGGAGCGUUUGGUUAAACAGCUGGAGGAGCAGGUGGAGAGGAAACGAAUUGCCGAUUACCUAAAGGCUGUAGUGGGCUACCACUAGUGACU-------CCCGUCCAG--UA
.......((((((.((...(((((.((((((..(((((..((..(...(....)...)..))..)).)))...))))))(((((....)))))..)))))-------..)))))))--). ( -40.20)
>DroYak_CAF1 15525 111 + 1
AGGGGAAACUGGAGCGUUCAGUUAAACAGCUGGAGGAGCAGGUGGAGAGCAAACGAAUUGCUGAUUACCUAAAGGCUGUAGUCGGCUACAACUAGUGAUU-------GCCGUCCGC--UA
((.(((.((((.(((.(((((((....))))))).....((((((..(((((.....)))))..))))))....))).))))(((((((.....)))...-------))))))).)--). ( -35.00)
>consensus
AGGGGAAACUGGAGCGUUCAGUUAAACAGCUGGAGGAGCAGGUGGAGAGCAAACGAAUUGCCGAUUACCUAAAGGCUGUACUCGGCUACAACUAGUGAUU_______CCCGUCCGC__UA
........(((...(.(((((((....))))))).)..)))(((((..((.........(((((((((.........)))))))))(((.....)))..........))..))))).... (-24.79 = -25.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:31 2006