| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,945,242 – 7,945,340 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 7,945,242 – 7,945,340 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 87.24 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -16.52 |
| Energy contribution | -17.03 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7945242 98 - 22224390 GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAGCGCACAAAGCAGAAACGGGAA ((((.(((((((((......).......((((...(((.((...(((((...))))).......))))).....)))).))).))))).))))..... ( -23.40) >DroSec_CAF1 7609 77 - 1 GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAG--------------------- .....(((((.((((...((((((((...((....)).........(....)))))))))......)))).))))).--------------------- ( -18.30) >DroEre_CAF1 9971 98 - 1 GUUUGUGUUUGUGGCGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAUAGCAGUGCACAAAGCGAAAACGGGAA ((((.(((((...(((..((((((((...((....)).........(....)))))))))((...........))..)))...))))).))))..... ( -19.50) >DroYak_CAF1 3384 98 - 1 GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAGUGCACAAAGCAGAAACGGGAA ((((.(((((.((((...((((((((...((....)).........(....)))))))))......)))).))))).(((.....))).))))..... ( -21.90) >consensus GUUUGUGUUUGUGGGGAAAACAAUGUAAGCUGAAAAGGAUCAAAAGCGCAAGGCGUUGUUGCAGGACCUAAAAGCAGUGCACAAAGCAGAAACGGGAA .....(((((.((((...((((((((...((....)).........(....)))))))))......)))).)))))...................... (-16.52 = -17.03 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:21 2006