Locus 2984

Sequence ID X_DroMel_CAF1
Location 7,944,026 – 7,944,143
Length 117
Max. P 0.528494
window4895

overview

Window 5

Location 7,944,026 – 7,944,143
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -47.75
Consensus MFE -27.54
Energy contribution -27.98
Covariance contribution 0.45
Combinations/Pair 1.25
Mean z-score -1.71
Structure conservation index 0.58
SVM decision value -0.01
SVM RNA-class probability 0.528494
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7944026 117 - 22224390
CUCCCAGCGUUUGGACAUGAGCAAGAAGAGCAUGUCAAGUCCAGCGGUGGGCUCAUCGUGCGGCCUGCCCCAGAAUCAGGGCAUGAUCGAAUCGCCCAGCAUGGGCAGCAUGC---AGUU
..((((.((((.((((.(((((.......))...))).)))))))).)))).....((((((..((((((........))))).)..).....((((.....)))).))))).---.... ( -44.30)
>DroVir_CAF1 14896 111 - 1
CAUGCAACGCCUGGACAUGAGCAAGAAGAGCAUGUCCAGCCCGGCGGUGGGCG------UUAGUGUGCCACAG---CAAUCGAUGCCGGAAUCGCCCAGCAUGGGCAGCAUGCAUCAGUU
(((((...(((((((((((..(.....)..))))))).((..((((((.((((------(..((.(((....)---))))..)))))...))))))..))..)))).)))))........ ( -46.10)
>DroPse_CAF1 6576 110 - 1
-GCCCAGCGGCUGGACAUGAGCCGAAAAAGCAUGUCGAGUCCGGCGGUCGGCU------GCAGCCAGCCCCAGGGCCAGGCAAUGGUUGAGUCGCCCAGCAUGGGCAGCAUGC---AGAU
-(((((((((((.((((((...........)))))).)))).(((((((((((------(..(((.(((....)))..)))..))))))).)))))..)).))))).......---.... ( -50.30)
>DroSec_CAF1 6398 117 - 1
CUCCCAGCGCUUGGACAUGAGCAAGAAGAGCAUGUCCAGUCCAGCGGUGGGCUCAUCGUGCGGCCUGCCCCAGAACCAGGGCAUGAUCGAGUCGCCCAGCAUGGGCAGCAUGC---AGUU
..((((.((((((((((((..(.....)..))))))))....)))).)))).....((((((..((((((........))))).)..).....((((.....)))).))))).---.... ( -49.70)
>DroYak_CAF1 2213 117 - 1
CUCCCAGCGUUUGGACAUGAGCAAGAAGAGCAUGUCCAGUCCAGCGGUGGGCUCAUCGUGCGGCCUGCCCCAGAAUCAGGGCAUGAUCGAGUCGCCCAGCAUGGGCAGCAUGC---AGUU
......((((.((((((((..(.....)..))))))))(((((((((..((((((((((((..((((.........))))))))))).)))))..)).)).)))))...))))---.... ( -48.20)
>DroPer_CAF1 5425 110 - 1
-GCCCAGCGGCUGGACAUGAGCCGAAAAAGCAUGUCGAGUCCGGCGGUCGGCU------GCAGCCAGCCCCAGGGCCAGGCAAUGGUUGAGUCGCCCAGCAUGGGUAGCAUGC---AGAU
-(((((((((((.((((((...........)))))).)))).(((((((((((------(..(((.(((....)))..)))..))))))).)))))..)).))))).......---.... ( -47.90)
>consensus
CUCCCAGCGCCUGGACAUGAGCAAGAAGAGCAUGUCCAGUCCAGCGGUGGGCU______GCAGCCUGCCCCAGAACCAGGCCAUGAUCGAGUCGCCCAGCAUGGGCAGCAUGC___AGUU
......((.....((((((..(.....)..))))))..(((((((((((((((........)))))))).....((((.....))))...........)).))))).))........... (-27.54 = -27.98 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:20 2006