| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,936,058 – 7,936,157 |
| Length | 99 |
| Max. P | 0.669957 |
| Location | 7,936,058 – 7,936,157 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 67.76 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -8.95 |
| Energy contribution | -12.58 |
| Covariance contribution | 3.63 |
| Combinations/Pair | 1.26 |
| Mean z-score | -3.15 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7936058 99 - 22224390 CCCUCACCCACCGAAACGGGAAACGGAAUUGAAAUUGAAACGAAAUCGCCAAGAGCAAGUGAGUGGUGAGAG---AAAGGAUGAAA--------GAGUCUGUGGA-G-GGGA (((((.(((........)))..(((((.((...............((((((...(....)...))))))...---...........--------)).))))).))-)-)).. ( -24.85) >DroSec_CAF1 11980 108 - 1 ACCCCUCCCGCCGAAACGGGAAACGGAAUUGAAAUUGAAACGAAAUCGCCAAGAGCAAGUGAGUGGUGGGAA---AAAGGAUGAAAUGGUGGUGAAAUGGUGGGGGG-GGGG .((((((((((((...(.(....).)...................((((((...(....)...))))))...---......................))))))))))-)).. ( -35.40) >DroSim_CAF1 11447 100 - 1 CCCCCUCCCGCCGAAACGGGAAACGGAAUUGAAAUUGAAACGAAAUCGCCAAGAGCAAGUGAGUGGUGAGAG---AAAGGAUGAAA--------AAGUCAUUGGAGA-GGGG (((((((((((((..((.(....)....(((...(((...((....)).)))...)))))...)))))....---....(((((..--------...))))))))).-)))) ( -27.40) >DroAna_CAF1 13485 94 - 1 CCCCCAUCUGC--------CAAACGAUUCUGAAAUUGAACCCAAGUCAACCAGAAUAAAG-----GCAAAAGCCAAAAGAAAUAAA-----GCAACCUCGUGGGGGGUGGGG .((((((((.(--------((....((((((...((((.......)))).))))))...(-----((....)))............-----.........))).)))))))) ( -29.70) >consensus CCCCCACCCGCCGAAACGGGAAACGGAAUUGAAAUUGAAACGAAAUCGCCAAGAGCAAGUGAGUGGUGAGAG___AAAGGAUGAAA________AAGUCGUGGGAGG_GGGG (((((((((((.....(.(....).)...................((((((............))))))..............................)))))))).))). ( -8.95 = -12.58 + 3.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:17 2006