| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,927,574 – 7,927,670 |
| Length | 96 |
| Max. P | 0.528314 |
| Location | 7,927,574 – 7,927,670 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 82.42 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -16.49 |
| Energy contribution | -15.94 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.85 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7927574 96 + 22224390 UGGCCUACGGCAAAAAAAAAACAAAAAAAGCUCAGGAAACCAGAACCAAUGUACAAUGUACGCCAAUGAGAGGUAUUAUUUGGUUCAAAGAUUUAG ((((((..(((..................))).)))...)))(((((((.((((...))))(((.......))).....))))))).......... ( -17.07) >DroSec_CAF1 3707 81 + 1 UGGCCCACGACG---------------AAGCUCGGGAAACCAGAACCAAUGUACAAUGUACACCAUUGCGAGGUAUUAUUUGGUUUAAAGAUUUAG (((.((.(((..---------------....)))))...)))(((((((.((((..((((......))))..))))...))))))).......... ( -17.50) >DroSim_CAF1 2857 81 + 1 UGGCCCACGGCG---------------AAGCUCGGGAAGCCAGAACCAAUGUACAAUGUACACCAUUGCGAGGUAUUAUUUGGUUCAAAGAUUUAG ((((((.((((.---------------..)).))))..))))(((((((.((((..((((......))))..))))...))))))).......... ( -23.30) >consensus UGGCCCACGGCG_______________AAGCUCGGGAAACCAGAACCAAUGUACAAUGUACACCAUUGCGAGGUAUUAUUUGGUUCAAAGAUUUAG ((((((..(((..................))).)))...)))(((((((.((((...))))(((.......))).....))))))).......... (-16.49 = -15.94 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:14 2006