| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 973,753 – 973,860 |
| Length | 107 |
| Max. P | 0.817510 |
| Location | 973,753 – 973,860 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.34 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -13.74 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 973753 107 - 22224390 AUAUCUCGAAGCCUUUUCUUCUCCUCUUCGUGUUGCACAUGCAUCAUGUAUUCCACGCAAUUGCAAUGGGAAUGGCAACA------GCAACUGCAACUGCAACUCUUCAGUCU .......((((......))))........(.((((((..((((...(((.(((((.((....))..))))).((....))------)))..))))..)))))).)........ ( -23.10) >DroSec_CAF1 56661 89 - 1 ------------CUUUGCUGUUCCUUUUCGCGUUGCACAUGCAUCAUGUAUUCCACGCGAUUGCAAUGUGAAUGGCA------------AUUGCAACUGCAACUCCUCAGUCU ------------...(((.(((((..(((((((((((..(((..............)))..))))))))))).)).)------------)).)))((((........)))).. ( -23.14) >DroEre_CAF1 69759 113 - 1 ACAUCUCGAAACCUUUACCUCUCCUCUUCGCGUUGCACAUGCCUCAUGUAUUCGAUGCAACUGCAAUGGCAACUGGAAGUGGAAGUGCAGCUGCAACUGCAACUCCUCAGUCU .....................(((..(((.(((((((..(((.((........)).)))..)))))))).))..))).(.(((..(((((......)))))..))).)..... ( -27.00) >DroYak_CAF1 61898 113 - 1 ACAUCUCGAAACCUUUACUUCUCCUCUCCGCGUUGCACAUGCAUCAUGUAUUCCAUGCAAUUGCAAUUGCAAUGGCAACUGCAACUGCAACUGCAAGUGCAACUCUUCAGUCU ...............................(((((((((((.....))))....((((.(((((.(((((..(....)))))).))))).)))).))))))).......... ( -30.20) >consensus ACAUCUCGAAACCUUUACUUCUCCUCUUCGCGUUGCACAUGCAUCAUGUAUUCCACGCAAUUGCAAUGGCAAUGGCAACU______GCAACUGCAACUGCAACUCCUCAGUCU ...............................((((((((((...))))).......(((.((((......................)))).)))....))))).......... (-13.74 = -13.93 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:06 2006