Locus 2978

Sequence ID X_DroMel_CAF1
Location 7,921,463 – 7,921,583
Length 120
Max. P 0.534828
window4887

overview

Window 7

Location 7,921,463 – 7,921,583
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.22
Mean single sequence MFE -44.88
Consensus MFE -26.97
Energy contribution -27.70
Covariance contribution 0.73
Combinations/Pair 1.26
Mean z-score -1.59
Structure conservation index 0.60
SVM decision value 0.00
SVM RNA-class probability 0.534828
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7921463 120 + 22224390
UGAACUGAUGGUCAGCGUACAUCCCAGUGGCCGCCAGCGUCUAAAGUACAUCAUGGCCAAUCCGUCCGAGAAGUCCACCCAACUGAGCCGCCAAAUGGCGCUGACCGUCAUGGAGACGGA
.....(((((((((((((.(((.....((((.(((((..........((.((.(((.(.....).))).)).))........))).)).)))).))))))))))))))))((....)).. ( -39.57)
>DroVir_CAF1 77 120 + 1
CGAGCUGAUGGUCAGCGUACAUCCAAGUAGUCGCCUGCGACUCAAGUACAUAAUGGGCAAUCCGCAGACACGUUCCGUCCAGCUGAGCGCUGUGAUGGCAUUCAGCGAAAUGGAAACGGA
...((((((((((.((((((......(.(((((....))))))..)))).....((.....)))).))).....(((((((((.....)))).))))))).)))))....((....)).. ( -36.40)
>DroSim_CAF1 79 120 + 1
UGAACUGAUGGUCAGCGUGCAUCCCAGUGGCCGCCAGCGUCUAAAGUACAUCAUGGCCAAUCCGUCUGACCAGGCCACCCAACUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA
.....(((((((((((((.((((....((((.(((((.(((....).))....(((((..............))))).....))).)).)))))))))))))))))))))((....)).. ( -47.04)
>DroEre_CAF1 76 120 + 1
UGAACUGAUGGUCAGUGUGCAUCCCAGUGGCCGCCAGCGUCUGAAGUAUAUCAUGCGCAACCCCUCCAAUCAGGCCACCCAAUUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA
.....(((((((((((((.((((...(((((.....((((.(((......))).))))........((((..((...))..)))).)))))..)))))))))))))))))((....)).. ( -45.70)
>DroYak_CAF1 79 120 + 1
UGAGCUGAUGGUCAGUGUGCAUCCCAGUGGCCGCCAGCGUCUGAAGUACAUCAUGCGCAACCCGUCCGUGCAGGCCACCCAGCUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA
.....(((((((((((((.((((....((((.((((((...............(((((.........)))))((....)).)))).)).)))))))))))))))))))))((....)).. ( -49.00)
>DroAna_CAF1 81 120 + 1
CGAACUGAUGGUCAGCGUGCAUCCGAGCGGGAAGCAGCGGCUGAAGUACAUUCUCCGCAAUCCCAGCGUGCACGAGACCCAGCUGAGCAGUCAGAUGGCGCUGACCAUCAUGGAGACGGA
.....(((((((((((((((((....((((((....((((..(((.....))).))))..)))).)))))))).....(((.((((....)))).))).)))))))))))((....)).. ( -51.60)
>consensus
UGAACUGAUGGUCAGCGUGCAUCCCAGUGGCCGCCAGCGUCUGAAGUACAUCAUGCGCAAUCCGUCCGAGCAGGCCACCCAACUGAGCCGCCAGAUGGCGCUGACCAUCAUGGAGACGGA
.....(((((((((((((.((((...(((((...(((.............................................))).)))))..)))))))))))))))))((....)).. (-26.97 = -27.70 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:12 2006