| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,912,288 – 7,912,399 |
| Length | 111 |
| Max. P | 0.671490 |
| Location | 7,912,288 – 7,912,399 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.94 |
| Mean single sequence MFE | -39.08 |
| Consensus MFE | -24.23 |
| Energy contribution | -23.57 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7912288 111 - 22224390 CCAACCGAUCUGCGAUCGGCAGGCAAUGGCCUGCAUGAUGGCAUCGAAACCUCCUUCGGGAGCAUCCAAGUUGCCCGACACUGUGGCAUUCUUCACCUCGUUCUGCCG------U---AC .....(((((...)))))((((((....))))))...((((((.(((...((((....)))).....(((.((((((....)).))))..)))....)))...)))))------)---.. ( -39.30) >DroVir_CAF1 9666 112 - 1 CCAGCCAACCUGUUGGCGACAGGCAAUCGCCUGCAUGAUGGCAUCGAAGCCGCCUUCGGGUGCAUCCAAAUUGCCCGAGACAGCAGCCUGUUUCACCUCGUUCUGU--------CCAUUU ...(((((....)))))((((((((((.(((........)))...((.((.(((....))))).))...)))))).(((((((....))))))).........)))--------)..... ( -39.50) >DroPse_CAF1 7785 114 - 1 CCAUCCCACCUGCUGGCGGCAGGCAAUGGCCUGCAUAAUGGCAUCGAAUCCGCCCUCGGGCGCAUCGAGAUUACCAGAGACAGCCGCAUCUUUCACCUCGUUCUGUGC------UCAGGC ........((((..(((.((((((....))))))....(((..((((...((((....))))..)))).....)))......)))((((....(.....)....))))------.)))). ( -37.10) >DroGri_CAF1 5116 113 - 1 CCAACCAACCUGCUGGCGGCAGGCAAUGGCCUGCAUUAUGGCAUCGAAACCACCUUCGGGUGCAUCCAAAUUGCCGGAGACAGCAGCCUGUUUUACCUCAUUCUGUU-------UUGGUU ..((((((.((((((...((((((....))))))....(((((.......((((....)))).........)))))....))))))..((........)).......-------)))))) ( -38.09) >DroMoj_CAF1 7301 120 - 1 CCAACCGAUCUGCUGUCGGCAGGCAAUCGCCUGCAUUAUGGCAUCGAAGCCACCUUCAGGUGCAUCCAAAUUUCCAGAGACAGCCGCCUCCUUCACCUCGUUCUGUAGGUGUGUUCAGAU .......((((((((((.((((((....))))))......(((((((((....)))).)))))...............)))))).........(((((........))))).....)))) ( -37.60) >DroAna_CAF1 4447 111 - 1 CCAGCCGACCUGCUGCCGGCAGGCGAUGGCCUGCAUGAUGGCGUCGAAGCCACCCUCGGGUGCGUCCAAGUUACCGGAUACGGCGGCAUCCUUUACCUCGUUCUGCCA------G---AU .((((......))))..(((((((((.((.......((((.(((((..((.(((....)))))((((........)))).))))).)))).....))))).)))))).------.---.. ( -42.90) >consensus CCAACCGACCUGCUGGCGGCAGGCAAUGGCCUGCAUGAUGGCAUCGAAGCCACCUUCGGGUGCAUCCAAAUUGCCAGAGACAGCAGCAUCCUUCACCUCGUUCUGUC_______UCAGAU .........((((((...((((((....))))))...........((...((((....))))..))..............)))))).................................. (-24.23 = -23.57 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:10 2006