Locus 2975

Sequence ID X_DroMel_CAF1
Location 7,911,293 – 7,911,384
Length 91
Max. P 0.970155
window4884

overview

Window 4

Location 7,911,293 – 7,911,384
Length 91
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 75.64
Mean single sequence MFE -19.68
Consensus MFE -12.59
Energy contribution -12.95
Covariance contribution 0.36
Combinations/Pair 1.15
Mean z-score -2.05
Structure conservation index 0.64
SVM decision value 1.65
SVM RNA-class probability 0.970155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7911293 91 + 22224390
-----ACAAAU--U-----GUAACGAUACUAUGGAAUCUAAACCAAAAUUAGCCUGGUGGAGCCGUGCGCUAAUUGCACAGCAACCUAUGGCUUUCACCACCA
-----......--.-----............(((........))).........(((((((((((((((.....)))))((....))..))).)))))))... ( -19.60)
>DroVir_CAF1 8162 101 + 1
AUACCCCAAAUCU-GAAAAAUAUCGAAAAU-CAAAAUUCGUACAAAAUUUAGCCUGGAGGAGCCAUGCCCCAAAUGCGAUGCUCCCUAUGGCUAUCGUAACAU
.(((.........-.........((((...-.....)))).........((((((((.(((((..(((.......)))..)))))))).)))))..))).... ( -21.20)
>DroSec_CAF1 11891 91 + 1
-----ACAAAU--U-----GUAACGAUACUACGGAAUCUAAACCAAAAUUAGCCUGGUGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA
-----......--.-----.....(((.(....).)))................(((((((((((((......((((...))))..)))))).)))))))... ( -19.00)
>DroEre_CAF1 2970 91 + 1
-----ACAAAU--U-----GUAACGAUACUAUGGAAUCUAAACCAAAAUUAGCCUGAAGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA
-----......--.-----.....((.....(((........))).....((((...(((.((.((((.......)))).))..)))..)))).))....... ( -16.40)
>DroYak_CAF1 15198 91 + 1
-----ACAAAU--U-----GUAACGAUACUACGGAAUCUGAAACAAAAUUAGCCUGAGGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA
-----.....(--(-----((...(((.(....).)))....))))....((((..(((..((.((((.......)))).))..)))..)))).......... ( -21.50)
>DroPer_CAF1 6201 95 + 1
---AAACAAAACAA-----AAAACAAAAAAUCCAAAUUAAAAACAAAAUUAGCCUGGAGGAGCCAUGCCCCAAAUGCGCUGCUCCCUAUGGCUAUCGAAACAU
---...........-----..............................((((((((.(((((..(((.......)))..)))))))).)))))......... ( -20.40)
>consensus
_____ACAAAU__U_____GUAACGAUACUACGGAAUCUAAACCAAAAUUAGCCUGGAGGAGCCGUGCCCUAAUUGCACUGCAACCUAUGGCUUUCACCACCA
..................................................((((...(((.((.((((.......)))).))..)))..)))).......... (-12.59 = -12.95 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:09 2006