Locus 2974

Sequence ID X_DroMel_CAF1
Location 7,908,381 – 7,908,481
Length 100
Max. P 0.666255
window4883

overview

Window 3

Location 7,908,381 – 7,908,481
Length 100
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 94.74
Mean single sequence MFE -30.80
Consensus MFE -29.56
Energy contribution -29.57
Covariance contribution 0.01
Combinations/Pair 1.09
Mean z-score -1.61
Structure conservation index 0.96
SVM decision value 0.28
SVM RNA-class probability 0.666255
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7908381 100 + 22224390
UCAUGUGGCUUUAGGCGGAAAGGAAACCCAGCGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUUGCCAGGAGCCA--AGAGAG
((...((((((..(((((((.((....))((((((((((((.((((((....))))))...).)))).)))))))....)))))))..))))))--...)). ( -34.80)
>DroSec_CAF1 9039 102 + 1
UCAUGUGGUUUUAGGCGGAAAGGAAACCCAACGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUUGCCAGGAGCCAAAAGAGAG
((...((((((..(((((((.((....))((((((((((((.((((((....))))))...).)))).)))))))....)))))))..))))))...))... ( -32.40)
>DroYak_CAF1 12305 99 + 1
UCAUGUGGUUUUAGGCGGAAAGGA-ACUCAGCGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUAGCCAGGAGCAA--AGAGAG
..((((((....((((.(((..((-(((((((...)))))...(((((....))))))))).))).))))....))))))...((.....))..--...... ( -25.20)
>consensus
UCAUGUGGUUUUAGGCGGAAAGGAAACCCAGCGAAGCUGACUCAAUGACCACUCAUUGUUCGUUCGGCCUUUGUUUACAUUUUGCCAGGAGCCA__AGAGAG
((...((((((..(((((((.((....))((((((((((((.((((((....))))))...).)))).)))))))....)))))))..))))))...))... (-29.56 = -29.57 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:08 2006