Locus 2971

Sequence ID X_DroMel_CAF1
Location 7,905,763 – 7,905,883
Length 120
Max. P 0.946686
window4879

overview

Window 9

Location 7,905,763 – 7,905,883
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -27.50
Consensus MFE -26.17
Energy contribution -26.68
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.95
SVM decision value 1.36
SVM RNA-class probability 0.946686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7905763 120 - 22224390
UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG
(.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... ( -28.40)
>DroSec_CAF1 6396 120 - 1
UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG
(.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... ( -28.40)
>DroSim_CAF1 9530 120 - 1
UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG
(.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... ( -28.40)
>DroYak_CAF1 9671 117 - 1
UGUGCGUGUGUUUGUCGAGUGAG--GGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAAAAGAAAUAACGAAA-AAGAGGAAUACACACGCAGAAGCGCG
((((.((((((((.(((.((((.--.((((..((......))))))..)))))..((...........)).......................-..)).)))))))).))))........ ( -24.80)
>consensus
UGUGCGUGUGUGUGUCGAGUGAGGGGGCAUGAGCAUGAACGUGUGUAGUCACCAAGUGAAUAAUAUUAACAAAUAAAAGAAGAAAAAACGAAAAAAGAGGAAUACACACGCAGAAGCGCG
(.(((((((((((..((.((((..(.(((((........))))).)..)))))..((...........))............................)..))))))))))).)...... (-26.17 = -26.68 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:05 2006