Locus 2967

Sequence ID X_DroMel_CAF1
Location 7,904,219 – 7,904,339
Length 120
Max. P 0.801943
window4872

overview

Window 2

Location 7,904,219 – 7,904,339
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 98.75
Mean single sequence MFE -37.60
Consensus MFE -36.72
Energy contribution -36.98
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.98
SVM decision value 0.62
SVM RNA-class probability 0.801943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7904219 120 - 22224390
CUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG
(((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... ( -37.70)
>DroSec_CAF1 4826 120 - 1
CUGCACUUUGCUGAUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG
(((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... ( -37.80)
>DroSim_CAF1 7946 120 - 1
CUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG
(((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... ( -37.70)
>DroYak_CAF1 8038 120 - 1
AUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUGCGAUUGCGGUGCGGCGG
.((((((((((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))......))))....)))))).... ( -37.20)
>consensus
CUGCACUUUGCUGGUUGGCGCGUAAAUAGGCAAACGCAAUUUGUUUGUUUACUUGUCGGGCGCUAAAUUGAAGAUAUGUUUAUCGUAAAUAAGCGCAAAAUUUCGAUUGCGGUGCGGCGG
(((((((..((...((((((.(((((((((((((.....))))))))))))).))))))(((((..(((...((((....))))...))).)))))............)))))))))... (-36.72 = -36.98 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:59 2006